academic/ugene: Updated for version 1.22.0

Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>

4 files changed, 17 insertions, 13 deletions

diff --git a/academic/ugene/README b/academic/ugene/README
index a163595629255..5ed2a5eaa6fb1 100644
--- a/academic/ugene/README
+++ b/academic/ugene/README
@@ -21,19 +21,28 @@ be launched on local resources or in a High Performance Computing
 built-in plugin system and structured UGENE API make it possible to
 extend the toolkit with new functionality.
 
+CITING:
+Unipro UGENE: a unified bioinformatics toolkit
+Konstantin Okonechnikov; Olga Golosova; Mikhail Fursov; the UGENE team
+Bioinformatics 2012 28: 1166-1167
+
 EXTERNAL TOOLS
 UGENE can use and drive a number of external tools, providing a nice
 and unified GUI. These are not needed at build time, but are highly
 recommended for the complete (and extended) functionality of the
-program. Almost all of them can be found at SlackBuilds.org:
+program. All of them are available at SlackBuilds.org:
 
+- bedGraphToBigWig (Convert bedGraph to bigWig file)
 - bedtools (A powerful toolset for genome arithmetic)
 - bowtie (A short read aligner of DNA sequences)
 - bowtie2 (A tool for aligning sequencing reads)
 - bwa (Burrows-Wheeler Aligner)
 - cap3 (CAP3: A DNA sequence assembly program)
 - cistrome-CEAS (CEAS: Cis-regulatory Element Annotation System)
+- cistrome-conductGO (Find the top-n highest expressed TFs)
+- cistrome-extra (Cistrome Applications Harvard extra apps)
 - cistrome-MACS (MACS: Model-based Analysis of ChIP-Seq)
+- cistrome-mdseqpos (Cistrome Applications Harvard mdseqpos)
 - clustalo (Clustal Omega)
 - clustalw (Multiple Sequence Alignment)
 - cufflinks (A reference-guided assembler for RNA-Seq experiments)
@@ -52,9 +61,4 @@ program. Almost all of them can be found at SlackBuilds.org:
 - vcftools (A program package designed for working with VCF files)
 
 Alternatively, check the program's website if you want to get them
-precompiled.
-
-CITING:
-Unipro UGENE: a unified bioinformatics toolkit
-Konstantin Okonechnikov; Olga Golosova; Mikhail Fursov; the UGENE team
-Bioinformatics 2012 28: 1166-1167
+precompiled: http://ugene.net/external.html
diff --git a/academic/ugene/slack-desc b/academic/ugene/slack-desc
index eaaddfa2e8ed2..7f8cef8e87bd1 100644
--- a/academic/ugene/slack-desc
+++ b/academic/ugene/slack-desc
@@ -16,4 +16,4 @@ ugene: user nterface. The toolkit supports multiple biological data formats
 ugene: and allows the retrieval of data from remote data sources.
 ugene:
 ugene: Home: http://ugene.net/
-ugene: References: /usr/doc/ugene-1.21.0/References
+ugene: References: /usr/doc/ugene-1.22.0/References
diff --git a/academic/ugene/ugene.SlackBuild b/academic/ugene/ugene.SlackBuild
index 3d8a8bce86191..91d53b0ec774f 100644
--- a/academic/ugene/ugene.SlackBuild
+++ b/academic/ugene/ugene.SlackBuild
@@ -23,7 +23,7 @@
 #  ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
 
 PRGNAM=ugene
-VERSION=${VERSION:-1.21.0}
+VERSION=${VERSION:-1.22.0}
 BUILD=${BUILD:-1}
 TAG=${TAG:-_SBo}
 
diff --git a/academic/ugene/ugene.info b/academic/ugene/ugene.info
index 1bde13608dd79..4ccb5b9d59141 100644
--- a/academic/ugene/ugene.info
+++ b/academic/ugene/ugene.info
@@ -1,10 +1,10 @@
 PRGNAM="ugene"
-VERSION="1.21.0"
+VERSION="1.22.0"
 HOMEPAGE="http://ugene.net/"
-DOWNLOAD="http://sourceforge.net/projects/sboppetrov/files/ugene/ugene-1.21.0.tar.gz"
-MD5SUM="d9745720a28e448b3c92bf7d03d510db"
+DOWNLOAD="http://sourceforge.net/projects/sboppetrov/files/ugene/ugene-1.22.0.tar.gz"
+MD5SUM="c876d46c75628a96ee1be5ae86b33b9c"
 DOWNLOAD_x86_64=""
 MD5SUM_x86_64=""
-REQUIRES="qt5"
+REQUIRES="qt5 libxkbcommon"
 MAINTAINER="Petar Petrov"
 EMAIL="slackalaxy@gmail.com"