diff options
| author | Petar Petrov <slackalaxy@gmail.com> | 2016-01-16 16:04:29 +0200 |
|---|---|---|
| committer | Willy Sudiarto Raharjo <willysr@slackbuilds.org> | 2016-01-17 09:40:16 +0700 |
| commit | ec514e32c410c839f8b552194bd94ee9e9b3920b (patch) | |
| tree | 6a4834ebfea2263834f6e9a8c8778d0a4f1605fd /academic | |
| parent | bfa0708f52a0fa06defcadd14439cd7671d05bf3 (diff) | |
Multiple: update email, year and slack-desc
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
Diffstat (limited to 'academic')
148 files changed, 298 insertions, 216 deletions
diff --git a/academic/EMBASSY/EMBASSY.SlackBuild b/academic/EMBASSY/EMBASSY.SlackBuild index 67e2ea847113e..81c21fe1b0c60 100644 --- a/academic/EMBASSY/EMBASSY.SlackBuild +++ b/academic/EMBASSY/EMBASSY.SlackBuild @@ -2,7 +2,7 @@ # Slackware build script for EMBASSY -# Copyright 2011-2013 Petar Petrov, petar.petrov@student.oulu.fi +# Copyright 2011-2016 Petar Petrov slackalaxy@gmail.com # All rights reserved. # # Redistribution and use of this script, with or without modification, is diff --git a/academic/EMBASSY/EMBASSY.info b/academic/EMBASSY/EMBASSY.info index eada51d0b1f32..8d09c9ac5d48d 100644 --- a/academic/EMBASSY/EMBASSY.info +++ b/academic/EMBASSY/EMBASSY.info @@ -1,24 +1,24 @@ PRGNAM="EMBASSY" VERSION="6.6.0" HOMEPAGE="http://emboss.sourceforge.net/embassy/" -DOWNLOAD="http://www.student.oulu.fi/~ppetrov/source/EMBOSS-6.6.0/CBSTOOLS-1.0.0.650.tar.gz \ - http://www.student.oulu.fi/~ppetrov/source/EMBOSS-6.6.0/CLUSTALOMEGA-1.1.0.tar.gz \ - http://www.student.oulu.fi/~ppetrov/source/EMBOSS-6.6.0/DOMAINATRIX-0.1.650.tar.gz \ - http://www.student.oulu.fi/~ppetrov/source/EMBOSS-6.6.0/DOMALIGN-0.1.650.tar.gz \ - http://www.student.oulu.fi/~ppetrov/source/EMBOSS-6.6.0/DOMSEARCH-0.1.650.tar.gz \ - http://www.student.oulu.fi/~ppetrov/source/EMBOSS-6.6.0/EMNU-1.05.650.tar.gz \ - http://www.student.oulu.fi/~ppetrov/source/EMBOSS-6.6.0/ESIM4-1.0.0.650.tar.gz \ - http://www.student.oulu.fi/~ppetrov/source/EMBOSS-6.6.0/HMMER-2.3.2.650.tar.gz \ - http://www.student.oulu.fi/~ppetrov/source/EMBOSS-6.6.0/IPRSCAN-4.3.1.650.tar.gz \ - http://www.student.oulu.fi/~ppetrov/source/EMBOSS-6.6.0/MEME-4.7.650.tar.gz \ - http://www.student.oulu.fi/~ppetrov/source/EMBOSS-6.6.0/MSE-3.0.0.650.tar.gz \ - http://www.student.oulu.fi/~ppetrov/source/EMBOSS-6.6.0/MYEMBOSS-6.5.1.tar.gz \ - http://www.student.oulu.fi/~ppetrov/source/EMBOSS-6.6.0/MYEMBOSSDEMO-6.5.0.tar.gz \ - http://www.student.oulu.fi/~ppetrov/source/EMBOSS-6.6.0/PHYLIPNEW-3.69.650.tar.gz \ - http://www.student.oulu.fi/~ppetrov/source/EMBOSS-6.6.0/SIGNATURE-0.1.650.tar.gz \ - http://www.student.oulu.fi/~ppetrov/source/EMBOSS-6.6.0/STRUCTURE-0.1.650.tar.gz \ - http://www.student.oulu.fi/~ppetrov/source/EMBOSS-6.6.0/TOPO-2.0.650.tar.gz \ - http://www.student.oulu.fi/~ppetrov/source/EMBOSS-6.6.0/VIENNA-1.7.2.650.tar.gz" +DOWNLOAD="https://sourceforge.net/projects/sboppetrov/files/EMBOSS/CBSTOOLS-1.0.0.650.tar.gz \ + https://sourceforge.net/projects/sboppetrov/files/EMBOSS/CLUSTALOMEGA-1.1.0.tar.gz \ + https://sourceforge.net/projects/sboppetrov/files/EMBOSS/DOMAINATRIX-0.1.650.tar.gz \ + https://sourceforge.net/projects/sboppetrov/files/EMBOSS/DOMALIGN-0.1.650.tar.gz \ + https://sourceforge.net/projects/sboppetrov/files/EMBOSS/DOMSEARCH-0.1.650.tar.gz \ + https://sourceforge.net/projects/sboppetrov/files/EMBOSS/EMNU-1.05.650.tar.gz \ + https://sourceforge.net/projects/sboppetrov/files/EMBOSS/ESIM4-1.0.0.650.tar.gz \ + https://sourceforge.net/projects/sboppetrov/files/EMBOSS/HMMER-2.3.2.650.tar.gz \ + https://sourceforge.net/projects/sboppetrov/files/EMBOSS/IPRSCAN-4.3.1.650.tar.gz \ + https://sourceforge.net/projects/sboppetrov/files/EMBOSS/MEME-4.7.650.tar.gz \ + https://sourceforge.net/projects/sboppetrov/files/EMBOSS/MSE-3.0.0.650.tar.gz \ + https://sourceforge.net/projects/sboppetrov/files/EMBOSS/MYEMBOSS-6.5.1.tar.gz \ + https://sourceforge.net/projects/sboppetrov/files/EMBOSS/MYEMBOSSDEMO-6.5.0.tar.gz \ + https://sourceforge.net/projects/sboppetrov/files/EMBOSS/PHYLIPNEW-3.69.650.tar.gz \ + https://sourceforge.net/projects/sboppetrov/files/EMBOSS/SIGNATURE-0.1.650.tar.gz \ + https://sourceforge.net/projects/sboppetrov/files/EMBOSS/STRUCTURE-0.1.650.tar.gz \ + https://sourceforge.net/projects/sboppetrov/files/EMBOSS/TOPO-2.0.650.tar.gz \ + https://sourceforge.net/projects/sboppetrov/files/EMBOSS/VIENNA-1.7.2.650.tar.gz" MD5SUM="237577573d9cbe5df18bac8dae17240b \ e4243a86c6127d99b1d501a54a7fbbf3 \ 5cbc136ded7826a0066e51074738a5a1 \ @@ -41,4 +41,4 @@ DOWNLOAD_x86_64="" MD5SUM_x86_64="" REQUIRES="EMBOSS" MAINTAINER="Petar Petrov" -EMAIL="petar.petrov@student.oulu.fi" +EMAIL="slackalaxy@gmail.com" diff --git a/academic/EMBOSS/EMBOSS.SlackBuild b/academic/EMBOSS/EMBOSS.SlackBuild index cefe8878975b1..2d139f3a76934 100644 --- a/academic/EMBOSS/EMBOSS.SlackBuild +++ b/academic/EMBOSS/EMBOSS.SlackBuild @@ -2,7 +2,7 @@ # Slackware build script for EMBOSS -# Copyright 2011-2013 Petar Petrov, petar.petrov@student.oulu.fi +# Copyright 2011-2016 Petar Petrov slackalaxy@gmail.com # All rights reserved. # # Redistribution and use of this script, with or without modification, is diff --git a/academic/EMBOSS/EMBOSS.info b/academic/EMBOSS/EMBOSS.info index 91ed13abbb01a..6cce29ea76456 100644 --- a/academic/EMBOSS/EMBOSS.info +++ b/academic/EMBOSS/EMBOSS.info @@ -1,10 +1,10 @@ PRGNAM="EMBOSS" VERSION="6.6.0" HOMEPAGE="http://emboss.sourceforge.net/" -DOWNLOAD="http://www.student.oulu.fi/~ppetrov/source/EMBOSS-6.6.0/EMBOSS-6.6.0.tar.gz" +DOWNLOAD="https://sourceforge.net/projects/sboppetrov/files/EMBOSS/EMBOSS-6.6.0.tar.gz" MD5SUM="cc3fca80cb0618deb10fa0d29fe90e4b" DOWNLOAD_x86_64="" MD5SUM_x86_64="" REQUIRES="jdk" MAINTAINER="Petar Petrov" -EMAIL="petar.petrov@student.oulu.fi" +EMAIL="slackalaxy@gmail.com" diff --git a/academic/EMBOSS/slack-desc b/academic/EMBOSS/slack-desc index ad3cd69da88a7..31f2203c71094 100644 --- a/academic/EMBOSS/slack-desc +++ b/academic/EMBOSS/slack-desc @@ -13,7 +13,7 @@ EMBOSS: developed for the needs of the molecular biology (e.g. EMBnet) EMBOSS: user community. EMBOSS: EMBOSS: References: /usr/doc/EMBOSS-6.6.0/References -EMBOSS: Details: /usr/share/EMBOSS/doc +EMBOSS: Details: /usr/share/EMBOSS/doc/ EMBOSS: Home: http://emboss.sourceforge.net/ EMBOSS: EMBOSS: diff --git a/academic/Gblocks/Gblocks.SlackBuild b/academic/Gblocks/Gblocks.SlackBuild index 193de59137685..2a71e48b91f5e 100644 --- a/academic/Gblocks/Gblocks.SlackBuild +++ b/academic/Gblocks/Gblocks.SlackBuild @@ -2,7 +2,7 @@ # Slackware build script for Gblocks -# Copyright 2011 Petar Petrov, ppetrov@paju.oulu.fi +# Copyright 2011-2016 Petar Petrov slackalaxy@gmail.com # All rights reserved. # # Redistribution and use of this script, with or without modification, is diff --git a/academic/Gblocks/Gblocks.info b/academic/Gblocks/Gblocks.info index f1eb256a8c714..47bcb82997ad4 100644 --- a/academic/Gblocks/Gblocks.info +++ b/academic/Gblocks/Gblocks.info @@ -7,4 +7,4 @@ DOWNLOAD_x86_64="http://molevol.cmima.csic.es/castresana/Gblocks/Gblocks_Linux64 MD5SUM_x86_64="c2c752ae4cbfda0b8bf09e6662585252" REQUIRES="" MAINTAINER="Petar Petrov" -EMAIL="ppetrov@paju.oulu.fi" +EMAIL="slackalaxy@gmail.com" diff --git a/academic/Gblocks/slack-desc b/academic/Gblocks/slack-desc index 7399accea4c6d..d0a4dbb64c539 100644 --- a/academic/Gblocks/slack-desc +++ b/academic/Gblocks/slack-desc @@ -11,8 +11,8 @@ Gblocks: Gblocks: Gblocks is a program that eliminates poorly aligned positions and Gblocks: divergent regions of an alignment of DNA or protein sequences. Gblocks: -Gblocks: References: /usr/doc/Gblocks-$VERSION/References Gblocks: Home: http://molevol.cmima.csic.es/castresana/Gblocks.html +Gblocks: References: /usr/doc/Gblocks-0.91b/References Gblocks: Gblocks: Gblocks: diff --git a/academic/ImageJ/ImageJ.SlackBuild b/academic/ImageJ/ImageJ.SlackBuild index c68d741a07744..0ddbb80c51350 100644 --- a/academic/ImageJ/ImageJ.SlackBuild +++ b/academic/ImageJ/ImageJ.SlackBuild @@ -2,7 +2,7 @@ # Slackware build script for ImageJ -# Copyright 2012-2015 Petar Petrov, petar.petrov@student.oulu.fi +# Copyright 2012-2016 Petar Petrov slackalaxy@gmail.com # All rights reserved. # # Redistribution and use of this script, with or without modification, is diff --git a/academic/ImageJ/ImageJ.info b/academic/ImageJ/ImageJ.info index a09e4c3a80d12..d1cf34a7a59cd 100644 --- a/academic/ImageJ/ImageJ.info +++ b/academic/ImageJ/ImageJ.info @@ -7,4 +7,4 @@ DOWNLOAD_x86_64="" MD5SUM_x86_64="" REQUIRES="jdk" MAINTAINER="Petar Petrov" -EMAIL="petar.petrov@student.oulu.fi" +EMAIL="slackalaxy@gmail.com" diff --git a/academic/ImageJ/slack-desc b/academic/ImageJ/slack-desc index f74d9aff7967e..eab74d7de408d 100644 --- a/academic/ImageJ/slack-desc +++ b/academic/ImageJ/slack-desc @@ -11,9 +11,9 @@ ImageJ: ImageJ: ImageJ is a Java image processing program inspired by NIH Image ImageJ: for the Macintosh. It was designed with an open architecture that ImageJ: provides extensibility via Java plugins. User-written plugins make -ImageJ: it possible to solve almost any image processing or analysis problem. +ImageJ: it possible to solve almost any image processing or analysis +ImageJ: problem. ImageJ: ImageJ: Home: http://rsb.info.nih.gov/ij/ ImageJ: ImageJ: -ImageJ: diff --git a/academic/PhyML/PhyML.SlackBuild b/academic/PhyML/PhyML.SlackBuild index 3578b7288c51e..6c8ccdd3a4148 100644 --- a/academic/PhyML/PhyML.SlackBuild +++ b/academic/PhyML/PhyML.SlackBuild @@ -2,7 +2,7 @@ # Slackware build script for PhyML -# Copyright 2011-2013 Petar Petrov, petar.petrov@student.oulu.fi +# Copyright 2011-2016 Petar Petrov slackalaxy@gmail.com # All rights reserved. # # Redistribution and use of this script, with or without modification, is diff --git a/academic/PhyML/PhyML.info b/academic/PhyML/PhyML.info index e37d35be73e39..dd1f897135bd7 100644 --- a/academic/PhyML/PhyML.info +++ b/academic/PhyML/PhyML.info @@ -7,4 +7,4 @@ DOWNLOAD_x86_64="" MD5SUM_x86_64="" REQUIRES="" MAINTAINER="Petar Petrov" -EMAIL="petar.petrov@student.oulu.fi" +EMAIL="slackalaxy@gmail.com" diff --git a/academic/PhyML/slack-desc b/academic/PhyML/slack-desc index 2d43cd602bc7a..76f34593184a4 100644 --- a/academic/PhyML/slack-desc +++ b/academic/PhyML/slack-desc @@ -13,7 +13,7 @@ PhyML: from alignments of nucleotide or amino acid sequences. It provides a PhyML: wide range of options that were designed to facilitate standard PhyML: phylogenetic analyses. PhyML: -PhyML: References: /usr/doc/PhyML-$VERSION/References PhyML: Home: http://code.google.com/p/phyml/ +PhyML: References: /usr/doc/PhyML-20131112/References PhyML: PhyML: diff --git a/academic/QtiPlot/QtiPlot.SlackBuild b/academic/QtiPlot/QtiPlot.SlackBuild index 719db33181873..5a4468ea05269 100644 --- a/academic/QtiPlot/QtiPlot.SlackBuild +++ b/academic/QtiPlot/QtiPlot.SlackBuild @@ -2,7 +2,7 @@ # Slackware build script for QtiPlot -# Copyright 2011-2012 Petar Petrov, ppetrov@paju.oulu.fi +# Copyright 2011-2016 Petar Petrov slackalaxy@gmail.com # All rights reserved. # # Redistribution and use of this script, with or without modification, is diff --git a/academic/QtiPlot/QtiPlot.info b/academic/QtiPlot/QtiPlot.info index 5a92860da9bb1..08ff9bc46cd36 100644 --- a/academic/QtiPlot/QtiPlot.info +++ b/academic/QtiPlot/QtiPlot.info @@ -3,7 +3,7 @@ VERSION="0.9.8.9" HOMEPAGE="http://www.qtiplot.com/" DOWNLOAD="http://sourceforge.net/projects/qtiplot.berlios/files/qtiplot-0.9.8.9.tar.bz2 \ http://sourceforge.net/projects/qtiplot.berlios/files/QTeXEngine-0.3-opensource.zip \ - http://www.student.oulu.fi/~ppetrov/source/importOPJ-20111106.tar.gz" + https://sourceforge.net/projects/sboppetrov/files/QtiPlot/importOPJ-20111106.tar.gz" MD5SUM="652096a365851da3b5f6fefdcbe2aaec \ d1b234623770ec6209b14d1b5137f2f1 \ 6f6925beb9e27f2ea0fbd01f23da548a" @@ -11,4 +11,4 @@ DOWNLOAD_x86_64="" MD5SUM_x86_64="" REQUIRES="alglib muParser qt-assistant-compat tamu_anova" MAINTAINER="Petar Petrov" -EMAIL="ppetrov@paju.oulu.fi" +EMAIL="slackalaxy@gmail.com" diff --git a/academic/aline/aline.SlackBuild b/academic/aline/aline.SlackBuild index 469e0812b6674..161ed68f3f3ca 100644 --- a/academic/aline/aline.SlackBuild +++ b/academic/aline/aline.SlackBuild @@ -2,7 +2,7 @@ # Slackware build script for aline -# Copyright 2013-2015 Petar Petrov, petar.petrov@student.oulu.fi +# Copyright 2013-2016 Petar Petrov slackalaxy@gmail.com # All rights reserved. # # Redistribution and use of this script, with or without modification, is diff --git a/academic/aline/aline.info b/academic/aline/aline.info index 8bc94a0236097..63f7ee3446021 100644 --- a/academic/aline/aline.info +++ b/academic/aline/aline.info @@ -7,4 +7,4 @@ DOWNLOAD_x86_64="" MD5SUM_x86_64="" REQUIRES="perl-tk" MAINTAINER="Petar Petrov" -EMAIL="petar.petrov@student.oulu.fi" +EMAIL="slackalaxy@gmail.com" diff --git a/academic/aline/slack-desc b/academic/aline/slack-desc index 61662e1715f67..2941b28807400 100644 --- a/academic/aline/slack-desc +++ b/academic/aline/slack-desc @@ -15,5 +15,5 @@ aline: which the user can then alter, embellish, markup etc to produce aline: the kind of sequence figure commonly found in biochemical articles. aline: aline: Home: http://crystal.bcs.uwa.edu.au/px/charlie/software/aline/ -aline: References: /usr/doc/aline-$VERSION/References +aline: References: /usr/doc/aline-1.0.025/References aline: diff --git a/academic/amplicon/amplicon.SlackBuild b/academic/amplicon/amplicon.SlackBuild index 588ea1115ebcf..0ab897e0912ee 100644 --- a/academic/amplicon/amplicon.SlackBuild +++ b/academic/amplicon/amplicon.SlackBuild @@ -2,7 +2,7 @@ # Slackware build script for amplicon -# Copyright 2011 Petar Petrov, ppetrov@paju.oulu.fi +# Copyright 2011-2016 Petar Petrov slackalaxy@gmail.com # All rights reserved. # # Redistribution and use of this script, with or without modification, is diff --git a/academic/amplicon/amplicon.info b/academic/amplicon/amplicon.info index a9e2b101938f5..ef71481903cf3 100644 --- a/academic/amplicon/amplicon.info +++ b/academic/amplicon/amplicon.info @@ -9,4 +9,4 @@ DOWNLOAD_x86_64="" MD5SUM_x86_64="" REQUIRES="" MAINTAINER="Petar Petrov" -EMAIL="ppetrov@paju.oulu.fi" +EMAIL="slackalaxy@gmail.com" diff --git a/academic/amplicon/slack-desc b/academic/amplicon/slack-desc index abc1d0d9f2e3e..b3c5ea1add023 100644 --- a/academic/amplicon/slack-desc +++ b/academic/amplicon/slack-desc @@ -14,6 +14,6 @@ amplicon: useful for designing 'group-specific' PCR primer sets that produce amplicon: amplicons from a targer group of species, but not from other groups amplicon: of species. amplicon: -amplicon: References: /usr/doc/amplicon-$VERSION/References amplicon: Home: http://amplicon.sourceforge.net/ +amplicon: References: /usr/doc/amplicon-b09.1/References amplicon: diff --git a/academic/amplifx/amplifx.SlackBuild b/academic/amplifx/amplifx.SlackBuild index b1b82d6e69b5a..5fa2210e3a3a9 100644 --- a/academic/amplifx/amplifx.SlackBuild +++ b/academic/amplifx/amplifx.SlackBuild @@ -2,7 +2,7 @@ # Slackware build script for amplifx -# Copyright 2014 Petar Petrov, petar.petrov@student.oulu.fi +# Copyright 2015-2016 Petar Petrov slackalaxy@gmail.com # All rights reserved. # # Redistribution and use of this script, with or without modification, is diff --git a/academic/amplifx/amplifx.info b/academic/amplifx/amplifx.info index 72fe05f382447..1ec2301b5be6c 100644 --- a/academic/amplifx/amplifx.info +++ b/academic/amplifx/amplifx.info @@ -7,4 +7,4 @@ DOWNLOAD_x86_64="UNSUPPORTED" MD5SUM_x86_64="" REQUIRES="" MAINTAINER="Petar Petrov" -EMAIL="petar.petrov@student.oulu.fi" +EMAIL="slackalaxy@gmail.com" diff --git a/academic/archeopteryx/archeopteryx.SlackBuild b/academic/archeopteryx/archeopteryx.SlackBuild index d4c812b0cd41e..bc74f234cd1da 100644 --- a/academic/archeopteryx/archeopteryx.SlackBuild +++ b/academic/archeopteryx/archeopteryx.SlackBuild @@ -2,7 +2,7 @@ # Slackware build script for archeopteryx -# Copyright 2014-2015 Petar Petrov petar.petrov@student.oulu.fi +# Copyright 2014-2016 Petar Petrov slackalaxy@gmail.com # All rights reserved. # # Redistribution and use of this script, with or without modification, is diff --git a/academic/archeopteryx/archeopteryx.info b/academic/archeopteryx/archeopteryx.info index 324660a963861..6c45f20adc534 100644 --- a/academic/archeopteryx/archeopteryx.info +++ b/academic/archeopteryx/archeopteryx.info @@ -7,4 +7,4 @@ DOWNLOAD_x86_64="" MD5SUM_x86_64="" REQUIRES="jdk" MAINTAINER="Petar Petrov" -EMAIL="petar.petrov@student.oulu.fi" +EMAIL="slackalaxy@gmail.com" diff --git a/academic/arka/arka.SlackBuild b/academic/arka/arka.SlackBuild index bb68495fa04a5..eea4b48a41d0d 100644 --- a/academic/arka/arka.SlackBuild +++ b/academic/arka/arka.SlackBuild @@ -1,12 +1,26 @@ #!/bin/sh # Slackware build script for arka -# Written by Petar Petrov, <ppetrov@paju.oulu.fi> and -# hereby submitted to the public domain -# THIS SLACKBUILD IS DISTRIBUTETD IN THE HOPE OF BEING -# USEFUL BUT WITHOUT ANY WARRANTY. THE AUTHOR IS _NOT_ -# RESPONSIBLE FOR ANY DAMAGE OR DATA LOSS CAUSED BY IT. +# Copyright 2011-2016 Petar Petrov slackalaxy@gmail.com +# All rights reserved. +# +# Redistribution and use of this script, with or without modification, is +# permitted provided that the following conditions are met: +# +# 1. Redistributions of this script must retain the above copyright +# notice, this list of conditions and the following disclaimer. +# +# THIS SOFTWARE IS PROVIDED BY THE AUTHOR "AS IS" AND ANY EXPRESS OR IMPLIED +# WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF +# MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO +# EVENT SHALL THE AUTHOR BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, +# SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, +# PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; +# OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, +# WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR +# OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF +# ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. PRGNAM=arka VERSION=${VERSION:-0.11} diff --git a/academic/arka/arka.info b/academic/arka/arka.info index 75d37bbfaecce..af925c9b4f48e 100644 --- a/academic/arka/arka.info +++ b/academic/arka/arka.info @@ -7,4 +7,4 @@ DOWNLOAD_x86_64="" MD5SUM_x86_64="" REQUIRES="genpak" MAINTAINER="Petar Petrov" -EMAIL="ppetrov@paju.oulu.fi" +EMAIL="slackalaxy@gmail.com" diff --git a/academic/arka/slack-desc b/academic/arka/slack-desc index 96c992a71f28d..6313b592bb8c4 100644 --- a/academic/arka/slack-desc +++ b/academic/arka/slack-desc @@ -12,8 +12,8 @@ arka: Arka is a program that serves as a graphical interface for the arka: programs from the GenPak (GP) package and has some interesting arka: functions on its own. arka: +arka: Home: http://www.bioinformatics.org/genpak/ arka: arka: arka: arka: -arka: Home: http://www.bioinformatics.org/genpak/ diff --git a/academic/bowtie/bowtie.SlackBuild b/academic/bowtie/bowtie.SlackBuild index cb9ab8a4fc6d5..0f5beae8519c4 100644 --- a/academic/bowtie/bowtie.SlackBuild +++ b/academic/bowtie/bowtie.SlackBuild @@ -2,7 +2,7 @@ # Slackware build script for bowtie -# Copyright 2013 Petar Petrov, petar.petrov@student.oulu.fi +# Copyright 2013-2016 Petar Petrov slackalaxy@gmail.com # All rights reserved. # # Redistribution and use of this script, with or without modification, is diff --git a/academic/bowtie/bowtie.info b/academic/bowtie/bowtie.info index 508462e5cca24..49d8c838cb673 100644 --- a/academic/bowtie/bowtie.info +++ b/academic/bowtie/bowtie.info @@ -1,10 +1,10 @@ PRGNAM="bowtie" VERSION="1.0.0" HOMEPAGE="http://bowtie-bio.sourceforge.net/" -DOWNLOAD="http://www.student.oulu.fi/~ppetrov/source/bowtie_1.0.0.orig.tar.gz" +DOWNLOAD="https://sourceforge.net/projects/sboppetrov/files/bowtie/bowtie_1.0.0.orig.tar.gz" MD5SUM="75d402c856b64958ec4bc0f67d011eb9" DOWNLOAD_x86_64="" MD5SUM_x86_64="" REQUIRES="" MAINTAINER="Petar Petrov" -EMAIL="petar.petrov@student.oulu.fi" +EMAIL="slackalaxy@gmail.com" diff --git a/academic/bowtie2/bowtie2.SlackBuild b/academic/bowtie2/bowtie2.SlackBuild index 7fa6ff270e9bb..43c3392d901f5 100644 --- a/academic/bowtie2/bowtie2.SlackBuild +++ b/academic/bowtie2/bowtie2.SlackBuild @@ -2,7 +2,7 @@ # Slackware build script for bowtie2 -# Copyright 2013 Petar Petrov, petar.petrov@student.oulu.fi +# Copyright 2013-2016 Petar Petrov slackalaxy@gmail.com # All rights reserved. # # Redistribution and use of this script, with or without modification, is diff --git a/academic/bowtie2/bowtie2.info b/academic/bowtie2/bowtie2.info index 9bbff6120d0c3..aca3d2fbd6bd0 100644 --- a/academic/bowtie2/bowtie2.info +++ b/academic/bowtie2/bowtie2.info @@ -7,4 +7,4 @@ DOWNLOAD_x86_64="" MD5SUM_x86_64="" REQUIRES="" MAINTAINER="Petar Petrov" -EMAIL="petar.petrov@student.oulu.fi" +EMAIL="slackalaxy@gmail.com" diff --git a/academic/bwa/bwa.SlackBuild b/academic/bwa/bwa.SlackBuild index 38cfa8df0ddf4..61bd05e400a35 100644 --- a/academic/bwa/bwa.SlackBuild +++ b/academic/bwa/bwa.SlackBuild @@ -2,7 +2,7 @@ # Slackware build script for bwa -# Copyright 2013-2015 Petar Petrov, petar.petrov@student.oulu.fi +# Copyright 2013-2016 Petar Petrov slackalaxy@gmail.com # All rights reserved. # # Redistribution and use of this script, with or without modification, is diff --git a/academic/bwa/bwa.info b/academic/bwa/bwa.info index df22cf74e34a9..825e7bb475c3e 100644 --- a/academic/bwa/bwa.info +++ b/academic/bwa/bwa.info @@ -7,4 +7,4 @@ DOWNLOAD_x86_64="" MD5SUM_x86_64="" REQUIRES="" MAINTAINER="Petar Petrov" -EMAIL="petar.petrov@student.oulu.fi" +EMAIL="slackalaxy@gmail.com" diff --git a/academic/cap3/cap3.SlackBuild b/academic/cap3/cap3.SlackBuild index 83065a2c8d01f..12ee761b1ebe6 100644 --- a/academic/cap3/cap3.SlackBuild +++ b/academic/cap3/cap3.SlackBuild @@ -2,7 +2,7 @@ # Slackware build script for cap3 -# Copyright 2013 Petar Petrov, ppetrov@paju.oulu.fi +# Copyright 2013-2016 Petar Petrov slackalaxy@gmail.com # All rights reserved. # # Redistribution and use of this script, with or without modification, is diff --git a/academic/cap3/cap3.info b/academic/cap3/cap3.info index c0186331d1f02..d72fab6233a28 100644 --- a/academic/cap3/cap3.info +++ b/academic/cap3/cap3.info @@ -7,4 +7,4 @@ DOWNLOAD_x86_64="http://seq.cs.iastate.edu/CAP3/cap3.linux.opteron64.tar" MD5SUM_x86_64="2d924766f6e8b5cf03bd2db81016d821" REQUIRES="" MAINTAINER="Petar Petrov" -EMAIL="ppetrov@paju.oulu.fi" +EMAIL="slackalaxy@gmail.com" diff --git a/academic/cap3/slack-desc b/academic/cap3/slack-desc index 8940c9286559c..a508a9c35d854 100644 --- a/academic/cap3/slack-desc +++ b/academic/cap3/slack-desc @@ -15,5 +15,5 @@ cap3: between reads, construction of multiple sequence alignments of reads, cap3: and generation of consensus sequences. cap3: cap3: Home: http://seq.cs.iastate.edu/ -cap3: References: /usr/doc/cap3-$VERSION/References +cap3: References: /usr/doc/cap3-20091029/References cap3: diff --git a/academic/cistrome-CEAS/cistrome-CEAS.SlackBuild b/academic/cistrome-CEAS/cistrome-CEAS.SlackBuild index a06e7ed225f19..b4bafb59280d1 100644 --- a/academic/cistrome-CEAS/cistrome-CEAS.SlackBuild +++ b/academic/cistrome-CEAS/cistrome-CEAS.SlackBuild @@ -2,7 +2,7 @@ # Slackware build script for cistrome-CEAS -# Copyright 2013 Petar Petrov, petar.petrov@student.oulu.fi +# Copyright 2013-2016 Petar Petrov slackalaxy@gmail.com # All rights reserved. # # Redistribution and use of this script, with or without modification, is diff --git a/academic/cistrome-CEAS/cistrome-CEAS.info b/academic/cistrome-CEAS/cistrome-CEAS.info index a61c58a620ec0..cb11446bc05a5 100644 --- a/academic/cistrome-CEAS/cistrome-CEAS.info +++ b/academic/cistrome-CEAS/cistrome-CEAS.info @@ -7,4 +7,4 @@ DOWNLOAD_x86_64="" MD5SUM_x86_64="" REQUIRES="" MAINTAINER="Petar Petrov" -EMAIL="petar.petrov@student.oulu.fi" +EMAIL="slackalaxy@gmail.com" diff --git a/academic/cistrome-MACS/cistrome-MACS.SlackBuild b/academic/cistrome-MACS/cistrome-MACS.SlackBuild index f22c48b227b04..971180836547d 100644 --- a/academic/cistrome-MACS/cistrome-MACS.SlackBuild +++ b/academic/cistrome-MACS/cistrome-MACS.SlackBuild @@ -2,7 +2,7 @@ # Slackware build script for cistrome-MACS -# Copyright 2013 Petar Petrov, petar.petrov@student.oulu.fi +# Copyright 2013-2016 Petar Petrov slackalaxy@gmail.com # All rights reserved. # # Redistribution and use of this script, with or without modification, is diff --git a/academic/cistrome-MACS/cistrome-MACS.info b/academic/cistrome-MACS/cistrome-MACS.info index 6b12d67dd3a81..e5f0b603c3f94 100644 --- a/academic/cistrome-MACS/cistrome-MACS.info +++ b/academic/cistrome-MACS/cistrome-MACS.info @@ -7,4 +7,4 @@ DOWNLOAD_x86_64="" MD5SUM_x86_64="" REQUIRES="" MAINTAINER="Petar Petrov" -EMAIL="petar.petrov@student.oulu.fi" +EMAIL="slackalaxy@gmail.com" diff --git a/academic/cistrome-MACS/slack-desc b/academic/cistrome-MACS/slack-desc index 82b067d296337..a21ee201a3de1 100644 --- a/academic/cistrome-MACS/slack-desc +++ b/academic/cistrome-MACS/slack-desc @@ -16,4 +16,4 @@ cistrome-MACS: based Analysis of ChIP-Seq (MACS) on short reads sequencers such cistrome-MACS: as Genome Analyzer (Illumina / Solexa). cistrome-MACS: cistrome-MACS: Home: http://liulab.dfci.harvard.edu/MACS/ -cistrome-MACS: References: /usr/doc/cistrome-MACS-1.4.2/references +cistrome-MACS: References: /usr/doc/cistrome-MACS-1.4.2/References diff --git a/academic/clustalo/clustalo.SlackBuild b/academic/clustalo/clustalo.SlackBuild index 3ed997060fd48..8990c6c63e97b 100644 --- a/academic/clustalo/clustalo.SlackBuild +++ b/academic/clustalo/clustalo.SlackBuild @@ -2,7 +2,7 @@ # Slackware build script for clustalo -# Copyright 2011-2014 Petar Petrov, petar.petrov@student.oulu.fi +# Copyright 2011-2016 Petar Petrov slackalaxy@gmail.com # All rights reserved. # # Redistribution and use of this script, with or without modification, is diff --git a/academic/clustalo/clustalo.info b/academic/clustalo/clustalo.info index e43a00d763df1..e76ec884880e4 100644 --- a/academic/clustalo/clustalo.info +++ b/academic/clustalo/clustalo.info @@ -7,4 +7,4 @@ DOWNLOAD_x86_64="" MD5SUM_x86_64="" REQUIRES="argtable" MAINTAINER="Petar Petrov" -EMAIL="petar.petrov@student.oulu.fi" +EMAIL="slackalaxy@gmail.com" diff --git a/academic/clustalo/slack-desc b/academic/clustalo/slack-desc index 502128cf0d040..6f180c0cff6ef 100644 --- a/academic/clustalo/slack-desc +++ b/academic/clustalo/slack-desc @@ -14,6 +14,6 @@ clustalo: It offers a significant increase in scalability over previous clustalo: versions, allowing hundreds of thousands of sequences to be clustalo: aligned in only a few hours. clustalo: -clustalo: References: /usr/doc/clustalo-$VERSION/References clustalo: Home: http://www.clustal.org/omega/ +clustalo: References: /usr/doc/clustalo-1.2.1/References clustalo: diff --git a/academic/clustalw/clustalw.SlackBuild b/academic/clustalw/clustalw.SlackBuild index 7a3d4fcb00833..17f5f46babea6 100644 --- a/academic/clustalw/clustalw.SlackBuild +++ b/academic/clustalw/clustalw.SlackBuild @@ -1,12 +1,26 @@ #!/bin/sh # Slackware build script for clustalw -# Written by Petar Petrov, <ppetrov@paju.oulu.fi> and -# hereby submitted to the public domain -# THIS SLACKBUILD IS DISTRIBUTETD IN THE HOPE OF BEING -# USEFUL BUT WITHOUT ANY WARRANTY. THE AUTHOR IS _NOT_ -# RESPONSIBLE FOR ANY DAMAGE OR DATA LOSS CAUSED BY IT. +# Copyright 2011-2016 Petar Petrov slackalaxy@gmail.com +# All rights reserved. +# +# Redistribution and use of this script, with or without modification, is +# permitted provided that the following conditions are met: +# +# 1. Redistributions of this script must retain the above copyright +# notice, this list of conditions and the following disclaimer. +# +# THIS SOFTWARE IS PROVIDED BY THE AUTHOR "AS IS" AND ANY EXPRESS OR IMPLIED +# WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF +# MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO +# EVENT SHALL THE AUTHOR BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, +# SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, +# PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; +# OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, +# WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR +# OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF +# ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. PRGNAM=clustalw VERSION=${VERSION:-2.1} diff --git a/academic/clustalw/clustalw.info b/academic/clustalw/clustalw.info index 92e755b6a2389..c7af47632b58d 100644 --- a/academic/clustalw/clustalw.info +++ b/academic/clustalw/clustalw.info @@ -7,4 +7,4 @@ DOWNLOAD_x86_64="" MD5SUM_x86_64="" REQUIRES="" MAINTAINER="Petar Petrov" -EMAIL="ppetrov@paju.oulu.fi" +EMAIL="slackalaxy@gmail.com" diff --git a/academic/clustalw/slack-desc b/academic/clustalw/slack-desc index 2750b3fffb679..7dee88863a331 100644 --- a/academic/clustalw/slack-desc +++ b/academic/clustalw/slack-desc @@ -8,12 +8,12 @@ |-----handy-ruler------------------------------------------------------| clustalw: clustalw (Multiple Sequence Alignment) clustalw: -clustalw: CLUSTAL W: improving the sensitivity of progressive multiple sequence -clustalw: alignment through sequence weighting, position-specific gap penalties -clustalw: and weight matrix choice. +clustalw: CLUSTAL W: improving the sensitivity of progressive multiple +clustalw: sequence alignment through sequence weighting, position-specific +clustalw: gap penalties and weight matrix choice. clustalw: +clustalw: Home: http://www.clustal.org/ +clustalw: References: /usr/doc/clustalw-2.1/References clustalw: clustalw: clustalw: -clustalw: References: /usr/doc/clustalw-$VERSION/References -clustalw: Home: http://www.clustal.org/ diff --git a/academic/clustalx/clustalx.SlackBuild b/academic/clustalx/clustalx.SlackBuild index e6aca5a25fd1e..0e0932e730304 100644 --- a/academic/clustalx/clustalx.SlackBuild +++ b/academic/clustalx/clustalx.SlackBuild @@ -1,17 +1,29 @@ #!/bin/sh # Slackware build script for clustalx -# Written by Petar Petrov, <ppetrov@paju.oulu.fi> and -# hereby submitted to the public domain -# Based on the clustalx PKGBUILD from Archlinux AUR -# (http://aur.archlinux.org/packages.php?ID=25080). -# PKGBUILD submitter is mickelliot and maintainer is -# machoo02. Thank you! - -# THIS SLACKBUILD IS DISTRIBUTETD IN THE HOPE OF BEING -# USEFUL BUT WITHOUT ANY WARRANTY. THE AUTHOR IS _NOT_ -# RESPONSIBLE FOR ANY DAMAGE OR DATA LOSS CAUSED BY IT. +# Copyright 2011-2016 Petar Petrov slackalaxy@gmail.com +# All rights reserved. +# +# Redistribution and use of this script, with or without modification, is +# permitted provided that the following conditions are met: +# +# 1. Redistributions of this script must retain the above copyright +# notice, this list of conditions and the following disclaimer. +# +# THIS SOFTWARE IS PROVIDED BY THE AUTHOR "AS IS" AND ANY EXPRESS OR IMPLIED +# WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF +# MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO +# EVENT SHALL THE AUTHOR BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, +# SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, +# PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; +# OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, +# WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR +# OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF +# ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. + +# With help from http://aur.archlinux.org/packages.php?ID=25080 +# PKGBUILD submitter is mickelliot and maintainer is machoo02 PRGNAM=clustalx VERSION=${VERSION:-2.1} diff --git a/academic/clustalx/clustalx.info b/academic/clustalx/clustalx.info index 3a958abfde4ff..e50629a5acc77 100644 --- a/academic/clustalx/clustalx.info +++ b/academic/clustalx/clustalx.info @@ -7,4 +7,4 @@ DOWNLOAD_x86_64="" MD5SUM_x86_64="" REQUIRES="" MAINTAINER="Petar Petrov" -EMAIL="ppetrov@paju.oulu.fi" +EMAIL="slackalaxy@gmail.com" diff --git a/academic/clustalx/slack-desc b/academic/clustalx/slack-desc index a3f4888ba3719..88a97ef6ace1b 100644 --- a/academic/clustalx/slack-desc +++ b/academic/clustalx/slack-desc @@ -12,8 +12,8 @@ clustalx: A GUI interface for the ClustalW multiple sequence alignment clustalx: program. It provides an integrated environment for performing clustalx: multiple sequence- and profile-alignments to analyse the results. clustalx: +clustalx: Home: http://www.clustal.org/ +clustalx: References: /usr/doc/clustalx-2.1/References clustalx: clustalx: clustalx: -clustalx: References: /usr/doc/clustalx-$VERSION/References -clustalx: Home: http://www.clustal.org/ diff --git a/academic/cufflinks/cufflinks.SlackBuild b/academic/cufflinks/cufflinks.SlackBuild index db01c787c7369..8ddadb1e4338c 100644 --- a/academic/cufflinks/cufflinks.SlackBuild +++ b/academic/cufflinks/cufflinks.SlackBuild @@ -2,7 +2,7 @@ # Slackware build script for cufflinks -# Copyright 2013-2014 Petar Petrov, petar.petrov@student.oulu.fi +# Copyright 2013-2016 Petar Petrov slackalaxy@gmail.com # All rights reserved. # # Redistribution and use of this script, with or without modification, is diff --git a/academic/cufflinks/cufflinks.info b/academic/cufflinks/cufflinks.info index 6dcf6aa08a159..e6bc02b301caf 100644 --- a/academic/cufflinks/cufflinks.info +++ b/academic/cufflinks/cufflinks.info @@ -7,4 +7,4 @@ DOWNLOAD_x86_64="" MD5SUM_x86_64="" REQUIRES="samtools" MAINTAINER="Petar Petrov" -EMAIL="petar.petrov@student.oulu.fi" +EMAIL="slackalaxy@gmail.com" diff --git a/academic/cutadapt/cutadapt.SlackBuild b/academic/cutadapt/cutadapt.SlackBuild index a7726bb702a8f..0ecea5813f95e 100644 --- a/academic/cutadapt/cutadapt.SlackBuild +++ b/academic/cutadapt/cutadapt.SlackBuild @@ -2,7 +2,7 @@ # Slackware build script for cutadapt -# Copyright 2015 Petar Petrov petar.petrov@student.oulu.fi +# Copyright 2015-2016 Petar Petrov slackalaxy@gmail.com # All rights reserved. # # Redistribution and use of this script, with or without modification, is diff --git a/academic/cutadapt/cutadapt.info b/academic/cutadapt/cutadapt.info index 69903433f95b7..fb8cc50d6bd80 100644 --- a/academic/cutadapt/cutadapt.info +++ b/academic/cutadapt/cutadapt.info @@ -7,4 +7,4 @@ DOWNLOAD_x86_64="" MD5SUM_x86_64="" REQUIRES="" MAINTAINER="Petar Petrov" -EMAIL="petar.petrov@student.oulu.fi" +EMAIL="slackalaxy@gmail.com" diff --git a/academic/cutadapt/slack-desc b/academic/cutadapt/slack-desc index a5720ff310ad1..d707e3606269d 100644 --- a/academic/cutadapt/slack-desc +++ b/academic/cutadapt/slack-desc @@ -13,7 +13,7 @@ cutadapt: tails and other types of unwanted sequence from your high- cutadapt: throughput sequencing reads. cutadapt: cutadapt: Home: https://pypi.python.org/pypi/cutadapt/ -cutadapt: Reference: /usr/doc/cutadapt-1.9/CITATION +cutadapt: References: /usr/doc/cutadapt-1.9/CITATION cutadapt: cutadapt: cutadapt: diff --git a/academic/finchtv/finchtv.SlackBuild b/academic/finchtv/finchtv.SlackBuild index f758937d3b3ab..09cad345ec056 100644 --- a/academic/finchtv/finchtv.SlackBuild +++ b/academic/finchtv/finchtv.SlackBuild @@ -2,7 +2,7 @@ # Slackware build script for finchtv -# Copyright 2015 Petar Petrov, petar.petrov@student.oulu.fi +# Copyright 2015-2016 Petar Petrov slackalaxy@gmail.com # All rights reserved. # # Redistribution and use of this script, with or without modification, is diff --git a/academic/finchtv/finchtv.info b/academic/finchtv/finchtv.info index 97df56fc941ce..12d23cc3d2976 100644 --- a/academic/finchtv/finchtv.info +++ b/academic/finchtv/finchtv.info @@ -7,4 +7,4 @@ DOWNLOAD_x86_64="" MD5SUM_x86_64="" REQUIRES="" MAINTAINER="Petar Petrov" -EMAIL="petar.petrov@oulu.oulu.fi" +EMAIL="slackalaxy@gmail.com" diff --git a/academic/gchemutils/gchemutils.SlackBuild b/academic/gchemutils/gchemutils.SlackBuild index 61a7d868f3dba..5f25fb0914a44 100644 --- a/academic/gchemutils/gchemutils.SlackBuild +++ b/academic/gchemutils/gchemutils.SlackBuild @@ -2,7 +2,7 @@ # Slackware build script for gchemutils -# Copyright 2011-2015 Petar Petrov, petar.petrov@student.oulu.fi +# Copyright 2011-2016 Petar Petrov slackalaxy@gmail.com # All rights reserved. # # Redistribution and use of this script, with or without modification, is diff --git a/academic/gchemutils/gchemutils.info b/academic/gchemutils/gchemutils.info index 2dd80c8e6daac..7848ec16bf302 100644 --- a/academic/gchemutils/gchemutils.info +++ b/academic/gchemutils/gchemutils.info @@ -7,4 +7,4 @@ DOWNLOAD_x86_64="" MD5SUM_x86_64="" REQUIRES="goffice chemical-mime-data bodr gtkglext openbabel" MAINTAINER="Petar Petrov" -EMAIL="petar.petrov@student.oulu.fi" +EMAIL="slackalaxy@gmail.com" diff --git a/academic/gelemental/gelemental.SlackBuild b/academic/gelemental/gelemental.SlackBuild index 013d8ba5b6aaa..22beaf7d9c170 100644 --- a/academic/gelemental/gelemental.SlackBuild +++ b/academic/gelemental/gelemental.SlackBuild @@ -2,7 +2,7 @@ # Slackware build script for gelemental -# Copyright 2011-2012 Petar Petrov, ppetrov@paju.oulu.fi +# Copyright 2011-2016 Petar Petrov slackalaxy@gmail.com # All rights reserved. # # Redistribution and use of this script, with or without modification, is diff --git a/academic/gelemental/gelemental.info b/academic/gelemental/gelemental.info index 890335ed84d05..26ae0cb79e795 100644 --- a/academic/gelemental/gelemental.info +++ b/academic/gelemental/gelemental.info @@ -1,10 +1,10 @@ PRGNAM="gelemental" VERSION="1.2.0" HOMEPAGE="http://freecode.com/projects/gelemental" -DOWNLOAD="http://ftp.debian.org/debian/pool/main/g/gelemental/gelemental_1.2.0.orig.tar.gz" +DOWNLOAD="https://sourceforge.net/projects/sboppetrov/files/gelemental/gelemental_1.2.0.orig.tar.gz" MD5SUM="94cc73c76a02f75598f579ff57696805" DOWNLOAD_x86_64="" MD5SUM_x86_64="" REQUIRES="" MAINTAINER="Petar Petrov" -EMAIL="ppetrov@paju.oulu.fi" +EMAIL="slackalaxy@gmail.com" diff --git a/academic/geneconv/geneconv.SlackBuild b/academic/geneconv/geneconv.SlackBuild index 7428bc8b9c365..6deb7a5204cae 100644 --- a/academic/geneconv/geneconv.SlackBuild +++ b/academic/geneconv/geneconv.SlackBuild @@ -2,7 +2,7 @@ # Slackware build script for geneconv -# Copyright 2014 Petar Petrov, petar.petrov@student.oulu.fi +# Copyright 2014-2016 Petar Petrov slackalaxy@gmail.com # All rights reserved. # # Redistribution and use of this script, with or without modification, is diff --git a/academic/geneconv/geneconv.info b/academic/geneconv/geneconv.info index 00baacd720687..344aef3bea127 100644 --- a/academic/geneconv/geneconv.info +++ b/academic/geneconv/geneconv.info @@ -11,4 +11,4 @@ DOWNLOAD_x86_64="" MD5SUM_x86_64="" REQUIRES="" MAINTAINER="Petar Petrov" -EMAIL="petar.petrov@student.oulu.fi" +EMAIL="slackalaxy@gmail.com" diff --git a/academic/genometools/genometools.SlackBuild b/academic/genometools/genometools.SlackBuild index 876198a7f3269..d91a7dfd6f47b 100644 --- a/academic/genometools/genometools.SlackBuild +++ b/academic/genometools/genometools.SlackBuild @@ -2,7 +2,7 @@ # Slackware build script for genometools -# Copyright 2014-2015 Petar Petrov, petar.petrov@student.oulu.fi +# Copyright 2014-2016 Petar Petrov slackalaxy@gmail.com # All rights reserved. # # Redistribution and use of this script, with or without modification, is diff --git a/academic/genometools/genometools.info b/academic/genometools/genometools.info index 9ba7c4dc6f805..005991dd50cca 100644 --- a/academic/genometools/genometools.info +++ b/academic/genometools/genometools.info @@ -7,4 +7,4 @@ DOWNLOAD_x86_64="" MD5SUM_x86_64="" REQUIRES="" MAINTAINER="Petar Petrov" -EMAIL="petar.petrov@student.oulu.fi" +EMAIL="slackalaxy@gmail.com" diff --git a/academic/genpak/genpak.SlackBuild b/academic/genpak/genpak.SlackBuild index 93763b86d3e56..9cf201f994943 100644 --- a/academic/genpak/genpak.SlackBuild +++ b/academic/genpak/genpak.SlackBuild @@ -2,7 +2,7 @@ # Slackware build script for genpak -# Copyright 2011 Petar Petrov, ppetrov@paju.oulu.fi +# Copyright 2011-2016 Petar Petrov slackalaxy@gmail.com # All rights reserved. # # Redistribution and use of this script, with or without modification, is diff --git a/academic/genpak/genpak.info b/academic/genpak/genpak.info index b1c8cf29c8a57..98aa6c1102396 100644 --- a/academic/genpak/genpak.info +++ b/academic/genpak/genpak.info @@ -7,4 +7,4 @@ DOWNLOAD_x86_64="" MD5SUM_x86_64="" REQUIRES="" MAINTAINER="Petar Petrov" -EMAIL="ppetrov@paju.oulu.fi" +EMAIL="slackalaxy@gmail.com" diff --git a/academic/gp2fasta/gp2fasta.SlackBuild b/academic/gp2fasta/gp2fasta.SlackBuild index 0b86ab29e7082..ade5c82653295 100644 --- a/academic/gp2fasta/gp2fasta.SlackBuild +++ b/academic/gp2fasta/gp2fasta.SlackBuild @@ -1,17 +1,31 @@ #!/bin/sh # Slackware build script for gp2fasta -# Written by Petar Petrov, <ppetrov@paju.oulu.fi> and -# hereby submitted to the public domain + +# Copyright 2011-2016 Petar Petrov slackalaxy@gmail.com +# All rights reserved. +# +# Redistribution and use of this script, with or without modification, is +# permitted provided that the following conditions are met: +# +# 1. Redistributions of this script must retain the above copyright +# notice, this list of conditions and the following disclaimer. +# +# THIS SOFTWARE IS PROVIDED BY THE AUTHOR "AS IS" AND ANY EXPRESS OR IMPLIED +# WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF +# MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO +# EVENT SHALL THE AUTHOR BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, +# SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, +# PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; +# OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, +# WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR +# OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF +# ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. # The icon used by the gp2fasta.desktop file is taken from # http://kde-look.org/content/show.php/Fasta+icons?content=54012 # Author is Luis-Miguel Rodriguez. Thank you! -# THIS SLACKBUILD IS DISTRIBUTETD IN THE HOPE OF BEING -# USEFUL BUT WITHOUT ANY WARRANTY. THE AUTHOR IS _NOT_ -# RESPONSIBLE FOR ANY DAMAGE OR DATA LOSS CAUSED BY IT. - PRGNAM=gp2fasta VERSION=${VERSION:-0.2} BUILD=${BUILD:-1} diff --git a/academic/gp2fasta/gp2fasta.info b/academic/gp2fasta/gp2fasta.info index b52ad7f953756..6d1c7bbdb918a 100644 --- a/academic/gp2fasta/gp2fasta.info +++ b/academic/gp2fasta/gp2fasta.info @@ -7,4 +7,4 @@ DOWNLOAD_x86_64="" MD5SUM_x86_64="" REQUIRES="" MAINTAINER="Petar Petrov" -EMAIL="ppetrov@paju.oulu.fi" +EMAIL="slackalaxy@gmail.com" diff --git a/academic/gp2fasta/slack-desc b/academic/gp2fasta/slack-desc index 02742d2ada719..3d8bd8cae8e91 100644 --- a/academic/gp2fasta/slack-desc +++ b/academic/gp2fasta/slack-desc @@ -12,8 +12,8 @@ gp2fasta: GP2fasta is a QT application converting gp files from NCBI GenPept gp2fasta: format to fasta. Its main purpose is to create fasta files with gp2fasta: short, but still accurate headers for sequence. gp2fasta: +gp2fasta: Home: http://gp2fasta.ovh.org gp2fasta: gp2fasta: gp2fasta: gp2fasta: -gp2fasta: Home: http://gp2fasta.ovh.org diff --git a/academic/ij-plugins-LOCI/ij-plugins-LOCI.SlackBuild b/academic/ij-plugins-LOCI/ij-plugins-LOCI.SlackBuild index 17cf7e9e0b1f9..3f07c62be62be 100644 --- a/academic/ij-plugins-LOCI/ij-plugins-LOCI.SlackBuild +++ b/academic/ij-plugins-LOCI/ij-plugins-LOCI.SlackBuild @@ -2,7 +2,7 @@ # Slackware build script for ij-plugins-LOCI -# Copyright 2013-2015 Petar Petrov, petar.petrov@student.oulu.fi +# Copyright 2013-2016 Petar Petrov slackalaxy@gmail.com # All rights reserved. # # Redistribution and use of this script, with or without modification, is diff --git a/academic/ij-plugins-LOCI/ij-plugins-LOCI.info b/academic/ij-plugins-LOCI/ij-plugins-LOCI.info index 382f05e8b4aa1..c012a8af8ed43 100644 --- a/academic/ij-plugins-LOCI/ij-plugins-LOCI.info +++ b/academic/ij-plugins-LOCI/ij-plugins-LOCI.info @@ -7,4 +7,4 @@ DOWNLOAD_x86_64="" MD5SUM_x86_64="" REQUIRES="ImageJ" MAINTAINER="Petar Petrov" -EMAIL="petar.petrov@student.oulu.fi" +EMAIL="slackalaxy@gmail.com" diff --git a/academic/ij-plugins-UCSD/ij-plugins-UCSD.SlackBuild b/academic/ij-plugins-UCSD/ij-plugins-UCSD.SlackBuild index 68aa096c88c4b..59f1ffd758f42 100644 --- a/academic/ij-plugins-UCSD/ij-plugins-UCSD.SlackBuild +++ b/academic/ij-plugins-UCSD/ij-plugins-UCSD.SlackBuild @@ -2,7 +2,7 @@ # Slackware build script for ij-plugins-UCSD -# Copyright 2013 Petar Petrov, ppetrov@paju.oulu.fi +# Copyright 2013-2016 Petar Petrov slackalaxy@gmail.com # All rights reserved. # # Redistribution and use of this script, with or without modification, is diff --git a/academic/ij-plugins-UCSD/ij-plugins-UCSD.info b/academic/ij-plugins-UCSD/ij-plugins-UCSD.info index a3e19968a452e..808701cb61ca6 100644 --- a/academic/ij-plugins-UCSD/ij-plugins-UCSD.info +++ b/academic/ij-plugins-UCSD/ij-plugins-UCSD.info @@ -7,4 +7,4 @@ DOWNLOAD_x86_64="" MD5SUM_x86_64="" REQUIRES="ImageJ" MAINTAINER="Petar Petrov" -EMAIL="ppetrov@paju.oulu.fi" +EMAIL="slackalaxy@gmail.com" diff --git a/academic/io_lib/io_lib.SlackBuild b/academic/io_lib/io_lib.SlackBuild index 8ca46acec4508..1aa140804b9c2 100644 --- a/academic/io_lib/io_lib.SlackBuild +++ b/academic/io_lib/io_lib.SlackBuild @@ -2,7 +2,7 @@ # Slackware build script for io_lib -# Copyright 2011-2014 Petar Petrov, petar.petrov@student.oulu.fi +# Copyright 2011-2016 Petar Petrov slackalaxy@gmail.com # All rights reserved. # # Redistribution and use of this script, with or without modification, is diff --git a/academic/io_lib/io_lib.info b/academic/io_lib/io_lib.info index 0a39fa7f59bc2..3c808c6ee08f0 100644 --- a/academic/io_lib/io_lib.info +++ b/academic/io_lib/io_lib.info @@ -7,4 +7,4 @@ DOWNLOAD_x86_64="" MD5SUM_x86_64="" REQUIRES="" MAINTAINER="Petar Petrov" -EMAIL="petar.petrov@student.oulu.fi" +EMAIL="slackalaxy@gmail.com" diff --git a/academic/isoelectric-point/isoelectric-point.SlackBuild b/academic/isoelectric-point/isoelectric-point.SlackBuild index 787c6e14afdb3..dc96c2f792532 100644 --- a/academic/isoelectric-point/isoelectric-point.SlackBuild +++ b/academic/isoelectric-point/isoelectric-point.SlackBuild @@ -1,12 +1,26 @@ #!/bin/sh -# Slackware build script for isoelectric-point -# Written by Petar Petrov, <ppetrov@paju.oulu.fi> and -# hereby submitted to the public domain - -# THIS SLACKBUILD IS DISTRIBUTETD IN THE HOPE OF BEING -# USEFUL BUT WITHOUT ANY WARRANTY. THE AUTHOR IS _NOT_ -# RESPONSIBLE FOR ANY DAMAGE OR DATA LOSS CAUSED BY IT. +# Slackware build script for isoelectrick-point + +# Copyright 2011-2016 Petar Petrov slackalaxy@gmail.com +# All rights reserved. +# +# Redistribution and use of this script, with or without modification, is +# permitted provided that the following conditions are met: +# +# 1. Redistributions of this script must retain the above copyright +# notice, this list of conditions and the following disclaimer. +# +# THIS SOFTWARE IS PROVIDED BY THE AUTHOR "AS IS" AND ANY EXPRESS OR IMPLIED +# WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF +# MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO +# EVENT SHALL THE AUTHOR BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, +# SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, +# PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; +# OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, +# WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR +# OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF +# ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. PRGNAM=isoelectric-point VERSION=${VERSION:-1.0} diff --git a/academic/isoelectric-point/isoelectric-point.info b/academic/isoelectric-point/isoelectric-point.info index 3b90a3617171b..88333bbc9efb9 100644 --- a/academic/isoelectric-point/isoelectric-point.info +++ b/academic/isoelectric-point/isoelectric-point.info @@ -7,4 +7,4 @@ DOWNLOAD_x86_64="" MD5SUM_x86_64="" REQUIRES="" MAINTAINER="Petar Petrov" -EMAIL="ppetrov@paju.oulu.fi" +EMAIL="slackalaxy@gmail.com" diff --git a/academic/isoelectric-point/slack-desc b/academic/isoelectric-point/slack-desc index 009c5829e5808..df2838b3bcdb4 100644 --- a/academic/isoelectric-point/slack-desc +++ b/academic/isoelectric-point/slack-desc @@ -9,11 +9,11 @@ isoelectric-point: isoelectric-point (Isoelectric point calculator) isoelectric-point: isoelectric-point: A small application to calculate the isoelectric point of a -isoelectric-point: protein. Additionally it outputs the molecular weight of the protein -isoelectric-point: analysed. +isoelectric-point: protein. Additionally it outputs the molecular weight of the +isoelectric-point: protein analysed. isoelectric-point: +isoelectric-point: Home: http://isoelectric.ovh.org/ isoelectric-point: isoelectric-point: isoelectric-point: isoelectric-point: -isoelectric-point: Home: http://isoelectric.ovh.org/ diff --git a/academic/jalview/jalview.SlackBuild b/academic/jalview/jalview.SlackBuild index 44978cdac485e..dd3d0327c1029 100644 --- a/academic/jalview/jalview.SlackBuild +++ b/academic/jalview/jalview.SlackBuild @@ -2,7 +2,7 @@ # Slackware build script for jalview -# Copyright 2013-2015 Petar Petrov, petar.petrov@student.oulu.fi +# Copyright 2013-2016 Petar Petrov slackalaxy@gmail.com # All rights reserved. # # Redistribution and use of this script, with or without modification, is diff --git a/academic/jalview/jalview.info b/academic/jalview/jalview.info index 1036a6e84e094..55566539fdda8 100644 --- a/academic/jalview/jalview.info +++ b/academic/jalview/jalview.info @@ -9,4 +9,4 @@ DOWNLOAD_x86_64="" MD5SUM_x86_64="" REQUIRES="jdk p7zip" MAINTAINER="Petar Petrov" -EMAIL="petar.petrov@student.oulu.fi" +EMAIL="slackalaxy@gmail.com" diff --git a/academic/lalnview/lalnview.SlackBuild b/academic/lalnview/lalnview.SlackBuild index 1129c9fbd4f09..cb92a3bcc3adb 100644 --- a/academic/lalnview/lalnview.SlackBuild +++ b/academic/lalnview/lalnview.SlackBuild @@ -2,7 +2,7 @@ # Slackware build script for lalnview -# Copyright 2011 Petar Petrov, ppetrov@paju.oulu.fi +# Copyright 2011-2016 Petar Petrov slackalaxy@gmail.com # All rights reserved. # # Redistribution and use of this script, with or without modification, is diff --git a/academic/lalnview/lalnview.info b/academic/lalnview/lalnview.info index 59e33ef455410..fec4dc96302eb 100644 --- a/academic/lalnview/lalnview.info +++ b/academic/lalnview/lalnview.info @@ -7,4 +7,4 @@ DOWNLOAD_x86_64="" MD5SUM_x86_64="" REQUIRES="PDFlib-Lite fltk" MAINTAINER="Petar Petrov" -EMAIL="ppetrov@paju.oulu.fi" +EMAIL="slackalaxy@gmail.com" diff --git a/academic/lalnview/slack-desc b/academic/lalnview/slack-desc index 3f5abc73f92a3..6fee662bd57fb 100644 --- a/academic/lalnview/slack-desc +++ b/academic/lalnview/slack-desc @@ -11,8 +11,8 @@ lalnview: lalnview: LalnView is a graphical program for visualizing local alignments lalnview: between two sequences (protein or nucleic acids). lalnview: -lalnview: References: /usr/doc/lalnview-$VERSION/References lalnview: Home: http://pbil.univ-lyon1.fr/software/lalnview.html +lalnview: References: /usr/doc/lalnview-3.0/References lalnview: lalnview: lalnview: diff --git a/academic/mafft/mafft.SlackBuild b/academic/mafft/mafft.SlackBuild index 1417dbdf686fa..9e70afa362506 100644 --- a/academic/mafft/mafft.SlackBuild +++ b/academic/mafft/mafft.SlackBuild @@ -2,7 +2,7 @@ # Slackware build script for mafft -# Copyright 2013-2015 Petar Petrov, petar.petrov@student.oulu.fi +# Copyright 2013-2016 Petar Petrov slackalaxy@gmail.com # All rights reserved. # # Redistribution and use of this script, with or without modification, is diff --git a/academic/mafft/mafft.info b/academic/mafft/mafft.info index 7edcae784f6dd..e6030a3f08f32 100644 --- a/academic/mafft/mafft.info +++ b/academic/mafft/mafft.info @@ -7,4 +7,4 @@ DOWNLOAD_x86_64="" MD5SUM_x86_64="" REQUIRES="" MAINTAINER="Petar Petrov" -EMAIL="petar.petrov@student.oulu.fi" +EMAIL="slackalaxy@gmail.com" diff --git a/academic/mkDSSP/mkDSSP.SlackBuild b/academic/mkDSSP/mkDSSP.SlackBuild index 3df9f702e4cc1..4a0e714a2c7b5 100644 --- a/academic/mkDSSP/mkDSSP.SlackBuild +++ b/academic/mkDSSP/mkDSSP.SlackBuild @@ -2,7 +2,7 @@ # Slackware build script for mkDSSP -# Copyright 2013 Petar Petrov, petar.petrov@student.oulu.fi +# Copyright 2013-2016 Petar Petrov slackalaxy@gmail.com # All rights reserved. # # Redistribution and use of this script, with or without modification, is diff --git a/academic/mkDSSP/mkDSSP.info b/academic/mkDSSP/mkDSSP.info index b957869525624..3f2ccdf32382b 100644 --- a/academic/mkDSSP/mkDSSP.info +++ b/academic/mkDSSP/mkDSSP.info @@ -7,4 +7,4 @@ DOWNLOAD_x86_64="" MD5SUM_x86_64="" REQUIRES="" MAINTAINER="Petar Petrov" -EMAIL="petar.petrov@student.oulu.fi" +EMAIL="slackalaxy@gmail.com" diff --git a/academic/mkDSSP/slack-desc b/academic/mkDSSP/slack-desc index eefbaea9dccc7..a1c71a66cc613 100644 --- a/academic/mkDSSP/slack-desc +++ b/academic/mkDSSP/slack-desc @@ -16,4 +16,4 @@ mkDSSP: that calculates DSSP entries from PDB entries. DSSP does not mkDSSP: predict secondary structure. mkDSSP: mkDSSP: Home: http://swift.cmbi.ru.nl/gv/dssp/ -mkDSSP: References: /usr/doc/mkDSSP:-$VERSION/References +mkDSSP: References: /usr/doc/mkDSSP:-2.2.1/References diff --git a/academic/mrbayes/mrbayes.SlackBuild b/academic/mrbayes/mrbayes.SlackBuild index ec6aeda4fae46..e2c510cb99178 100644 --- a/academic/mrbayes/mrbayes.SlackBuild +++ b/academic/mrbayes/mrbayes.SlackBuild @@ -2,7 +2,7 @@ # Slackware build script for mrbayes -# Copyright 2013-2015 Petar Petrov, petar.petrov@student.oulu.fi +# Copyright 2013-2016 Petar Petrov slackalaxy@gmail.com # All rights reserved. # # Redistribution and use of this script, with or without modification, is diff --git a/academic/mrbayes/mrbayes.info b/academic/mrbayes/mrbayes.info index 119b260bb24d3..0ac26e2633840 100644 --- a/academic/mrbayes/mrbayes.info +++ b/academic/mrbayes/mrbayes.info @@ -7,4 +7,4 @@ DOWNLOAD_x86_64="" MD5SUM_x86_64="" REQUIRES="" MAINTAINER="Petar Petrov" -EMAIL="petar.petrov@student.oulu.fi" +EMAIL="slackalaxy@gmail.com" diff --git a/academic/muscle/muscle.SlackBuild b/academic/muscle/muscle.SlackBuild index af816446d75fd..5a73e12824aef 100644 --- a/academic/muscle/muscle.SlackBuild +++ b/academic/muscle/muscle.SlackBuild @@ -1,12 +1,26 @@ #!/bin/sh # Slackware build script for muscle -# Written by Petar Petrov, <ppetrov@paju.oulu.fi> and -# hereby submitted to the public domain -# THIS SLACKBUILD IS DISTRIBUTETD IN THE HOPE OF BEING -# USEFUL BUT WITHOUT ANY WARRANTY. THE AUTHOR IS _NOT_ -# RESPONSIBLE FOR ANY DAMAGE OR DATA LOSS CAUSED BY IT. +# Copyright 2011-2016 Petar Petrov slackalaxy@gmail.com +# All rights reserved. +# +# Redistribution and use of this script, with or without modification, is +# permitted provided that the following conditions are met: +# +# 1. Redistributions of this script must retain the above copyright +# notice, this list of conditions and the following disclaimer. +# +# THIS SOFTWARE IS PROVIDED BY THE AUTHOR "AS IS" AND ANY EXPRESS OR IMPLIED +# WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF +# MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO +# EVENT SHALL THE AUTHOR BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, +# SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, +# PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; +# OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, +# WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR +# OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF +# ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. PRGNAM=muscle VERSION=${VERSION:-3.8.31} diff --git a/academic/muscle/muscle.info b/academic/muscle/muscle.info index 96a842c73f6d0..1167cc14bf438 100644 --- a/academic/muscle/muscle.info +++ b/academic/muscle/muscle.info @@ -7,4 +7,4 @@ DOWNLOAD_x86_64="" MD5SUM_x86_64="" REQUIRES="" MAINTAINER="Petar Petrov" -EMAIL="ppetrov@paju.oulu.fi" +EMAIL="slackalaxy@gmail.com" diff --git a/academic/muscle/slack-desc b/academic/muscle/slack-desc index 2eda19a73ef9a..5e4e7da441ca5 100644 --- a/academic/muscle/slack-desc +++ b/academic/muscle/slack-desc @@ -13,7 +13,7 @@ muscle: or nucleotide sequences. A range of options is provided that give muscle: you the choice of optimizing accuracy, speed, or some compromise muscle: between the two. muscle: +muscle: Home: http://www.drive5.com/muscle/ +muscle: References: /usr/doc/muscle-3.8.31/References muscle: muscle: -muscle: References: /usr/doc/muscle-$VERSION/References -muscle: Home: http://www.drive5.com/muscle/ diff --git a/academic/ncbi-blast-plus/ncbi-blast-plus.SlackBuild b/academic/ncbi-blast-plus/ncbi-blast-plus.SlackBuild index cde0c8bf55828..83d1cbe07b373 100644 --- a/academic/ncbi-blast-plus/ncbi-blast-plus.SlackBuild +++ b/academic/ncbi-blast-plus/ncbi-blast-plus.SlackBuild @@ -2,7 +2,7 @@ # Slackware build script for ncbi-blast-plus -# Copyright 2013-2015 Petar Petrov, petar.petrov@student.oulu.fi +# Copyright 2013-2016 Petar Petrov slackalaxy@gmail.com # All rights reserved. # # Redistribution and use of this script, with or without modification, is diff --git a/academic/ncbi-blast-plus/ncbi-blast-plus.info b/academic/ncbi-blast-plus/ncbi-blast-plus.info index a63ed3166c70b..8513677795dc9 100644 --- a/academic/ncbi-blast-plus/ncbi-blast-plus.info +++ b/academic/ncbi-blast-plus/ncbi-blast-plus.info @@ -7,4 +7,4 @@ DOWNLOAD_x86_64="ftp://ftp.ncbi.nih.gov/blast/executables/blast+/2.2.31/ncbi-bla MD5SUM_x86_64="ae789a5bfb523cef95ac40e5a6b1929e" REQUIRES="" MAINTAINER="Petar Petrov" -EMAIL="petar.petrov@student.oulu.fi" +EMAIL="slackalaxy@gmail.com" diff --git a/academic/ncbi-blast/ncbi-blast.SlackBuild b/academic/ncbi-blast/ncbi-blast.SlackBuild index 69e71a1c44631..aa8dc14e5d75c 100644 --- a/academic/ncbi-blast/ncbi-blast.SlackBuild +++ b/academic/ncbi-blast/ncbi-blast.SlackBuild @@ -2,7 +2,7 @@ # Slackware build script for ncbi-blast -# Copyright 2013 Petar Petrov, ppetrov@paju.oulu.fi +# Copyright 2013-2016 Petar Petrov slackalaxy@gmail.com # All rights reserved. # # Redistribution and use of this script, with or without modification, is diff --git a/academic/ncbi-blast/ncbi-blast.info b/academic/ncbi-blast/ncbi-blast.info index 9d786987774a0..f1f0cc6bff567 100644 --- a/academic/ncbi-blast/ncbi-blast.info +++ b/academic/ncbi-blast/ncbi-blast.info @@ -7,4 +7,4 @@ DOWNLOAD_x86_64="ftp://ftp.ncbi.nih.gov/blast/executables/release/2.2.26/blast-2 MD5SUM_x86_64="809798a912f4fb37f62406201456df67" REQUIRES="" MAINTAINER="Petar Petrov" -EMAIL="ppetrov@paju.oulu.fi" +EMAIL="slackalaxy@gmail.com" diff --git a/academic/paml/paml.SlackBuild b/academic/paml/paml.SlackBuild index 5c3bc898477ef..5ad919580d69f 100644 --- a/academic/paml/paml.SlackBuild +++ b/academic/paml/paml.SlackBuild @@ -2,7 +2,7 @@ # Slackware build script for paml -# Copyright 2013-2014 Petar Petrov, petar.petrov@student.oulu.fi +# Copyright 2013-2016 Petar Petrov slackalaxy@gmail.com # All rights reserved. # # Redistribution and use of this script, with or without modification, is diff --git a/academic/paml/paml.info b/academic/paml/paml.info index 4b0a5a9d45dda..c3b51a2f0fc6c 100644 --- a/academic/paml/paml.info +++ b/academic/paml/paml.info @@ -9,4 +9,4 @@ DOWNLOAD_x86_64="" MD5SUM_x86_64="" REQUIRES="" MAINTAINER="Petar Petrov" -EMAIL="petar.petrov@student.oulu.fi" +EMAIL="slackalaxy@gmail.com" diff --git a/academic/pamlX/pamlX.SlackBuild b/academic/pamlX/pamlX.SlackBuild index d725e7b7cadb5..acf8840b42c4f 100644 --- a/academic/pamlX/pamlX.SlackBuild +++ b/academic/pamlX/pamlX.SlackBuild @@ -2,7 +2,7 @@ # Slackware build script for pamlX -# Copyright 2013-2015 Petar Petrov, petar.petrov@student.oulu.fi +# Copyright 2013-2016 Petar Petrov slackalaxy@gmail.com # All rights reserved. # # Redistribution and use of this script, with or without modification, is diff --git a/academic/pamlX/pamlX.info b/academic/pamlX/pamlX.info index cbb22fb430076..7e9ac1b1afef4 100644 --- a/academic/pamlX/pamlX.info +++ b/academic/pamlX/pamlX.info @@ -7,4 +7,4 @@ DOWNLOAD_x86_64="" MD5SUM_x86_64="" REQUIRES="paml" MAINTAINER="Petar Petrov" -EMAIL="petar.petrov@student.oulu.fi" +EMAIL="slackalaxy@gmail.com" diff --git a/academic/perlprimer/perlprimer.SlackBuild b/academic/perlprimer/perlprimer.SlackBuild index 345d8156bc28e..182c189b732c8 100644 --- a/academic/perlprimer/perlprimer.SlackBuild +++ b/academic/perlprimer/perlprimer.SlackBuild @@ -2,7 +2,7 @@ # Slackware build script for perlprimer -# Copyright 2011-2014 Petar Petrov, petar.petrov@student.oulu.fi +# Copyright 2011-2016 Petar Petrov slackalaxy@gmail.com # All rights reserved. # # Redistribution and use of this script, with or without modification, is diff --git a/academic/perlprimer/perlprimer.info b/academic/perlprimer/perlprimer.info index 239cbcedc6759..abf42fdaf6843 100644 --- a/academic/perlprimer/perlprimer.info +++ b/academic/perlprimer/perlprimer.info @@ -7,4 +7,4 @@ DOWNLOAD_x86_64="" MD5SUM_x86_64="" REQUIRES="libwww-perl perl-tk" MAINTAINER="Petar Petrov" -EMAIL="petar.petrov@student.oulu.fi" +EMAIL="slackalaxy@gmail.com" diff --git a/academic/perlprimer/slack-desc b/academic/perlprimer/slack-desc index 1ceca83edbd5f..76f45a1ded99d 100644 --- a/academic/perlprimer/slack-desc +++ b/academic/perlprimer/slack-desc @@ -13,7 +13,7 @@ perlprimer: that designs primers for standard PCR, bisulphite PCR, real-time PCR perlprimer: (QPCR) and sequencing. It aims to automate and simplify the process perlprimer: of primer design. perlprimer: -perlprimer: References: /usr/doc/perlprimer-$VERSION/References perlprimer: Home: http://perlprimer.sourceforge.net/ +perlprimer: References: /usr/doc/perlprimer-1.1.21/References perlprimer: perlprimer: diff --git a/academic/plasmidomics/plasmidomics.SlackBuild b/academic/plasmidomics/plasmidomics.SlackBuild index 265750c45335f..a437ad363740e 100644 --- a/academic/plasmidomics/plasmidomics.SlackBuild +++ b/academic/plasmidomics/plasmidomics.SlackBuild @@ -2,7 +2,7 @@ # Slackware build script for plasmidomics -# Copyright 2011 Petar Petrov, ppetrov@paju.oulu.fi +# Copyright 2011-2016 Petar Petrov slackalaxy@gmail.com # All rights reserved. # # Redistribution and use of this script, with or without modification, is diff --git a/academic/plasmidomics/plasmidomics.info b/academic/plasmidomics/plasmidomics.info index 129cd37f9a2bc..268ea5fbbd42e 100644 --- a/academic/plasmidomics/plasmidomics.info +++ b/academic/plasmidomics/plasmidomics.info @@ -7,4 +7,4 @@ DOWNLOAD_x86_64="" MD5SUM_x86_64="" REQUIRES="" MAINTAINER="Petar Petrov" -EMAIL="ppetrov@paju.oulu.fi" +EMAIL="slackalaxy@gmail.com" diff --git a/academic/primer3/primer3.SlackBuild b/academic/primer3/primer3.SlackBuild index 94ea102563660..6d332e60d56b8 100644 --- a/academic/primer3/primer3.SlackBuild +++ b/academic/primer3/primer3.SlackBuild @@ -2,7 +2,7 @@ # Slackware build script for primer3 -# Copyright 2011-2013 Petar Petrov, petar.petrov@student.oulu.fi +# Copyright 2011-2016 Petar Petrov slackalaxy@gmail.com # All rights reserved. # # Redistribution and use of this script, with or without modification, is diff --git a/academic/primer3/primer3.info b/academic/primer3/primer3.info index 59d138842600c..0782ab7c6dac3 100644 --- a/academic/primer3/primer3.info +++ b/academic/primer3/primer3.info @@ -7,4 +7,4 @@ DOWNLOAD_x86_64="" MD5SUM_x86_64="" REQUIRES="" MAINTAINER="Petar Petrov" -EMAIL="petar.petrov@student.oulu.fi" +EMAIL="slackalaxy@gmail.com" diff --git a/academic/primer3/slack-desc b/academic/primer3/slack-desc index c7a0de5b48854..ecda61a417941 100644 --- a/academic/primer3/slack-desc +++ b/academic/primer3/slack-desc @@ -14,6 +14,6 @@ primer3: ubiquitous tool in genetics and molecular biology. Primer3 can also primer3: design hybridization probes and sequencing primers. primer3: primer3: Home: http://primer3.sourceforge.net/ -primer3: References: /usr/doc/primer3-$VERSION/References +primer3: References: /usr/doc/primer3-2.3.6/References primer3: primer3: diff --git a/academic/samtools/samtools.SlackBuild b/academic/samtools/samtools.SlackBuild index a3c0e2d1a7d5a..02dff9fbbe507 100644 --- a/academic/samtools/samtools.SlackBuild +++ b/academic/samtools/samtools.SlackBuild @@ -2,7 +2,7 @@ # Slackware build script for samtools -# Copyright 2013 Petar Petrov, petar.petrov@student.oulu.fi +# Copyright 2013-2016 Petar Petrov slackalaxy@gmail.com # All rights reserved. # # Redistribution and use of this script, with or without modification, is diff --git a/academic/samtools/samtools.info b/academic/samtools/samtools.info index 51a89dca1e0e7..79136533ae4cb 100644 --- a/academic/samtools/samtools.info +++ b/academic/samtools/samtools.info @@ -7,4 +7,4 @@ DOWNLOAD_x86_64="" MD5SUM_x86_64="" REQUIRES="" MAINTAINER="Petar Petrov" -EMAIL="ppetrov@paju.oulu.fi" +EMAIL="slackalaxy@gmail.com" diff --git a/academic/seaview/seaview.SlackBuild b/academic/seaview/seaview.SlackBuild index de4b13147bdf5..0f310048fc4d3 100644 --- a/academic/seaview/seaview.SlackBuild +++ b/academic/seaview/seaview.SlackBuild @@ -2,7 +2,7 @@ # Slackware build script for seaview -# Copyright 2011-2015 Petar Petrov, petar.petrov@student.oulu.fi +# Copyright 2011-2016 Petar Petrov slackalaxy@gmail.com # All rights reserved. # # Redistribution and use of this script, with or without modification, is diff --git a/academic/seaview/seaview.info b/academic/seaview/seaview.info index a1b90cf5f9e11..4ec273720f3c0 100644 --- a/academic/seaview/seaview.info +++ b/academic/seaview/seaview.info @@ -7,4 +7,4 @@ DOWNLOAD_x86_64="" MD5SUM_x86_64="" REQUIRES="fltk13 PDFlib-Lite Gblocks PhyML clustalo muscle" MAINTAINER="Petar Petrov" -EMAIL="petar.petrov@student.oulu.fi" +EMAIL="slackalaxy@gmail.com" diff --git a/academic/sequence-analysis/sequence-analysis.SlackBuild b/academic/sequence-analysis/sequence-analysis.SlackBuild index 03a62d71d7a38..2db816ff72900 100644 --- a/academic/sequence-analysis/sequence-analysis.SlackBuild +++ b/academic/sequence-analysis/sequence-analysis.SlackBuild @@ -2,7 +2,7 @@ # Slackware build script for sequence-analysis -# Copyright 2011-2015 Petar Petrov, petar.petrov@student.oulu.fi +# Copyright 2011-2016 Petar Petrov slackalaxy@gmail.com # All rights reserved. # # Redistribution and use of this script, with or without modification, is diff --git a/academic/sequence-analysis/sequence-analysis.info b/academic/sequence-analysis/sequence-analysis.info index fe9493397634f..d5e7228042bb5 100644 --- a/academic/sequence-analysis/sequence-analysis.info +++ b/academic/sequence-analysis/sequence-analysis.info @@ -7,4 +7,4 @@ DOWNLOAD_x86_64="" MD5SUM_x86_64="" REQUIRES="jdk" MAINTAINER="Petar Petrov" -EMAIL="petar.petrov@student.oulu.fi" +EMAIL="slackalaxy@gmail.com" diff --git a/academic/sequence-analysis/slack-desc b/academic/sequence-analysis/slack-desc index c1daa3507780e..bc78bdddb3404 100644 --- a/academic/sequence-analysis/slack-desc +++ b/academic/sequence-analysis/slack-desc @@ -10,10 +10,10 @@ sequence-analysis: sequence-analysis (Biologic sequences analysis) sequence-analysis: sequence-analysis: A collage of coding projects for biologic sequences analysis. sequence-analysis: +sequence-analysis: Home: http://informagen.com/SA/ sequence-analysis: sequence-analysis: sequence-analysis: sequence-analysis: sequence-analysis: sequence-analysis: -sequence-analysis: Home: http://informagen.com/SA/ diff --git a/academic/snpEff/snpEff.SlackBuild b/academic/snpEff/snpEff.SlackBuild index f72bdb308d9c2..b3bacb044c4a5 100644 --- a/academic/snpEff/snpEff.SlackBuild +++ b/academic/snpEff/snpEff.SlackBuild @@ -2,7 +2,7 @@ # Slackware build script for snpEff -# Copyright 2015 Petar Petrov petar.petrov@student.oulu.fi +# Copyright 2015-2016 Petar Petrov slackalaxy@gmail.com # All rights reserved. # # Redistribution and use of this script, with or without modification, is diff --git a/academic/snpEff/snpEff.info b/academic/snpEff/snpEff.info index bc80b9cc384a2..2ab219a48eb20 100644 --- a/academic/snpEff/snpEff.info +++ b/academic/snpEff/snpEff.info @@ -7,4 +7,4 @@ DOWNLOAD_x86_64="" MD5SUM_x86_64="" REQUIRES="jdk" MAINTAINER="Petar Petrov" -EMAIL="petar.petrov@student.oulu.fi" +EMAIL="slackalaxy@gmail.com" diff --git a/academic/spidey/spidey.SlackBuild b/academic/spidey/spidey.SlackBuild index 5a31c4f26affd..e9ea109df7ad0 100644 --- a/academic/spidey/spidey.SlackBuild +++ b/academic/spidey/spidey.SlackBuild @@ -1,6 +1,6 @@ #!/bin/sh -# Copyright 2011-2015 Petar Petrov, petar.petrov@student.oulu.fi +# Copyright 2011-2016 Petar Petrov slackalaxy@gmail.com # All rights reserved. # # Redistribution and use of this script, with or without modification, is diff --git a/academic/spidey/spidey.info b/academic/spidey/spidey.info index 3a21a46c7a788..1ea84ac7d47e8 100644 --- a/academic/spidey/spidey.info +++ b/academic/spidey/spidey.info @@ -1,10 +1,10 @@ PRGNAM="spidey" VERSION="20060601" HOMEPAGE="http://www.ncbi.nlm.nih.gov/spidey/index.html" -DOWNLOAD="ftp://ftp.ncbi.nih.gov/pub/wheelan/Spidey/spidey.linux.gz" +DOWNLOAD="https://sourceforge.net/projects/sboppetrov/files/spidey/spidey.linux.gz" MD5SUM="2e56ef2e4fcf57eca266fb1b3bb56c7e" -DOWNLOAD_x86_64="http://www.student.oulu.fi/~ppetrov/source/spidey.linux.64.gz" +DOWNLOAD_x86_64="https://sourceforge.net/projects/sboppetrov/files/spidey/spidey.linux.64.gz" MD5SUM_x86_64="79f1f95976346e0d0f5c7f717deac176" REQUIRES="" MAINTAINER="Petar Petrov" -EMAIL="petar.petrov@student.oulu.fi" +EMAIL="slackalaxy@gmail.com" diff --git a/academic/squizz/squizz.SlackBuild b/academic/squizz/squizz.SlackBuild index 8e7aa632ac84f..2104146b30e57 100644 --- a/academic/squizz/squizz.SlackBuild +++ b/academic/squizz/squizz.SlackBuild @@ -2,7 +2,7 @@ # Slackware build script for squizz -# Copyright 2013 Petar Petrov, ppetrov@paju.oulu.fi +# Copyright 2013-2016 Petar Petrov slackalaxy@gmail.com # All rights reserved. # # Redistribution and use of this script, with or without modification, is diff --git a/academic/squizz/squizz.info b/academic/squizz/squizz.info index ceb11c761d262..8fb393c1d8d67 100644 --- a/academic/squizz/squizz.info +++ b/academic/squizz/squizz.info @@ -7,4 +7,4 @@ DOWNLOAD_x86_64="" MD5SUM_x86_64="" REQUIRES="" MAINTAINER="Petar Petrov" -EMAIL="ppetrov@paju.oulu.fi" +EMAIL="slackalaxy@gmail.com" diff --git a/academic/staden/slack-desc b/academic/staden/slack-desc index 063d9a75329fa..dfe0102e2dabb 100644 --- a/academic/staden/slack-desc +++ b/academic/staden/slack-desc @@ -12,8 +12,8 @@ staden: The programs of the Staden package offer excellent and fully staden: developed set of DNA sequence assembly, editing, analysis staden: tools and more. staden: -staden: Homepage: http://staden.sourceforge.net/ -staden: +staden: Home: http://staden.sourceforge.net/ +staden: References: /usr/doc/staden-2.0.0b10/References staden: staden: staden: diff --git a/academic/staden/staden.SlackBuild b/academic/staden/staden.SlackBuild index dce45900e2ae8..8eba659af0118 100644 --- a/academic/staden/staden.SlackBuild +++ b/academic/staden/staden.SlackBuild @@ -2,7 +2,7 @@ # Slackware build script for staden -# Copyright 2011-2015 Petar Petrov, petar.petrov@student.oulu.fi +# Copyright 2011-2016 Petar Petrov slackalaxy@gmail.com # All rights reserved. # # Redistribution and use of this script, with or without modification, is diff --git a/academic/staden/staden.info b/academic/staden/staden.info index 15238270ef562..9675a78e66502 100644 --- a/academic/staden/staden.info +++ b/academic/staden/staden.info @@ -7,4 +7,4 @@ DOWNLOAD_x86_64="" MD5SUM_x86_64="" REQUIRES="io_lib tklib" MAINTAINER="Petar Petrov" -EMAIL="petar.petrov@student.oulu.fi" +EMAIL="slackalaxy@gmail.com" diff --git a/academic/t_coffee/t_coffee.SlackBuild b/academic/t_coffee/t_coffee.SlackBuild index c39a83cc95202..7329c61e2ffd1 100644 --- a/academic/t_coffee/t_coffee.SlackBuild +++ b/academic/t_coffee/t_coffee.SlackBuild @@ -2,7 +2,7 @@ # Slackware build script for t_coffee -# Copyright 2013-2014 Petar Petrov, petar.petrov@student.oulu.fi +# Copyright 2013-2016 Petar Petrov slackalaxy@gmail.com # All rights reserved. # # Redistribution and use of this script, with or without modification, is diff --git a/academic/t_coffee/t_coffee.info b/academic/t_coffee/t_coffee.info index 5f78b0c2bc48b..129a6c258de2b 100644 --- a/academic/t_coffee/t_coffee.info +++ b/academic/t_coffee/t_coffee.info @@ -7,4 +7,4 @@ DOWNLOAD_x86_64="" MD5SUM_x86_64="" REQUIRES="" MAINTAINER="Petar Petrov" -EMAIL="petar.petrov@student.oulu.fi" +EMAIL="slackalaxy@gmail.com" diff --git a/academic/tabix/tabix.SlackBuild b/academic/tabix/tabix.SlackBuild index 6daf2a6aedef5..017733aaa0151 100644 --- a/academic/tabix/tabix.SlackBuild +++ b/academic/tabix/tabix.SlackBuild @@ -2,7 +2,7 @@ # Slackware build script for tabix -# Copyright 2013 Petar Petrov, petar.petrov@student.oulu.fi +# Copyright 2013-2016 Petar Petrov slackalaxy@gmail.com # All rights reserved. # # Redistribution and use of this script, with or without modification, is diff --git a/academic/tabix/tabix.info b/academic/tabix/tabix.info index c0a47ee6317e3..bac2016304d17 100644 --- a/academic/tabix/tabix.info +++ b/academic/tabix/tabix.info @@ -7,4 +7,4 @@ DOWNLOAD_x86_64="" MD5SUM_x86_64="" REQUIRES="" MAINTAINER="Petar Petrov" -EMAIL="petar.petrov@student.oulu.fi" +EMAIL="slackalaxy@gmail.com" diff --git a/academic/topdraw/topdraw.SlackBuild b/academic/topdraw/topdraw.SlackBuild index 4a74c94c84e34..1a48ba94fae9a 100644 --- a/academic/topdraw/topdraw.SlackBuild +++ b/academic/topdraw/topdraw.SlackBuild @@ -2,7 +2,7 @@ # Slackware build script for topdraw -# Copyright 2013 Petar Petrov, petar.petrov@student.oulu.fi +# Copyright 2013-2016 Petar Petrov slackalaxy@gmail.com # All rights reserved. # # Redistribution and use of this script, with or without modification, is diff --git a/academic/topdraw/topdraw.info b/academic/topdraw/topdraw.info index 0119d2ae5383d..caaad940bb6ae 100644 --- a/academic/topdraw/topdraw.info +++ b/academic/topdraw/topdraw.info @@ -7,4 +7,4 @@ DOWNLOAD_x86_64="" MD5SUM_x86_64="" REQUIRES="" MAINTAINER="Petar Petrov" -EMAIL="petar.petrov@student.oulu.fi" +EMAIL="slackalaxy@gmail.com" diff --git a/academic/tophat/tophat.SlackBuild b/academic/tophat/tophat.SlackBuild index 88b0fda64e207..4d4d306fc8c19 100644 --- a/academic/tophat/tophat.SlackBuild +++ b/academic/tophat/tophat.SlackBuild @@ -2,7 +2,7 @@ # Slackware build script for tophat -# Copyright 2013-2015 Petar Petrov, petar.petrov@student.oulu.fi +# Copyright 2013-2016 Petar Petrov slackalaxy@gmail.com # All rights reserved. # # Redistribution and use of this script, with or without modification, is diff --git a/academic/tophat/tophat.info b/academic/tophat/tophat.info index 45e1fcb6874eb..e7d9aafd50236 100644 --- a/academic/tophat/tophat.info +++ b/academic/tophat/tophat.info @@ -7,4 +7,4 @@ DOWNLOAD_x86_64="" MD5SUM_x86_64="" REQUIRES="" MAINTAINER="Petar Petrov" -EMAIL="petar.petrov@student.oulu.fi" +EMAIL="slackalaxy@gmail.com" diff --git a/academic/treeview/slack-desc b/academic/treeview/slack-desc index b2988fbd35392..32c744d759da1 100644 --- a/academic/treeview/slack-desc +++ b/academic/treeview/slack-desc @@ -11,8 +11,8 @@ treeview: treeview: TreeView X provides a simple way to view the contents of a NEXUS, treeview: PHYLIP, Hennig86, Clustal, or other format tree file. treeview: -treeview: References: /usr/doc/treeview-$VERSION/References treeview: Home: http://code.google.com/p/treeviewx/ +treeview: References: /usr/doc/treeview-0.5/References treeview: treeview: treeview: diff --git a/academic/treeview/treeview.SlackBuild b/academic/treeview/treeview.SlackBuild index 6a06e3b943fe8..1465f26fae397 100644 --- a/academic/treeview/treeview.SlackBuild +++ b/academic/treeview/treeview.SlackBuild @@ -2,7 +2,7 @@ # Slackware build script for treeview -# Copyright 2011 Petar Petrov, ppetrov@paju.oulu.fi +# Copyright 2011-2016 Petar Petrov slackalaxy@gmail.com # All rights reserved. # # Redistribution and use of this script, with or without modification, is diff --git a/academic/treeview/treeview.info b/academic/treeview/treeview.info index 0189232e2ca79..8310833f45515 100644 --- a/academic/treeview/treeview.info +++ b/academic/treeview/treeview.info @@ -7,4 +7,4 @@ DOWNLOAD_x86_64="" MD5SUM_x86_64="" REQUIRES="wxPython" MAINTAINER="Petar Petrov" -EMAIL="ppetrov@paju.oulu.fi" +EMAIL="slackalaxy@gmail.com" diff --git a/academic/ucsc-blat/slack-desc b/academic/ucsc-blat/slack-desc index cb6eff3cf2a60..032c6e31e2044 100644 --- a/academic/ucsc-blat/slack-desc +++ b/academic/ucsc-blat/slack-desc @@ -15,5 +15,5 @@ ucsc-blat: alignments and 50 times faster for protein alignments at sensitivity ucsc-blat: settings typically used when comparing vertebrate sequences. ucsc-blat: ucsc-blat: Home: http://www.kentinformatics.com/ -ucsc-blat: References:/usr/doc/ucsc-blat-$VERSION/References +ucsc-blat: References:/usr/doc/ucsc-blat-34/References ucsc-blat: diff --git a/academic/ucsc-blat/ucsc-blat.SlackBuild b/academic/ucsc-blat/ucsc-blat.SlackBuild index 0e5ad7b72fc6d..c2a01b480f6f0 100644 --- a/academic/ucsc-blat/ucsc-blat.SlackBuild +++ b/academic/ucsc-blat/ucsc-blat.SlackBuild @@ -2,7 +2,7 @@ # Slackware build script for ucsc-blat -# Copyright 2013 Petar Petrov, ppetrov@paju.oulu.fi +# Copyright 2013-2016 Petar Petrov slackalaxy@gmail.com # All rights reserved. # # Redistribution and use of this script, with or without modification, is diff --git a/academic/ucsc-blat/ucsc-blat.info b/academic/ucsc-blat/ucsc-blat.info index da78e80fff291..453622017554d 100644 --- a/academic/ucsc-blat/ucsc-blat.info +++ b/academic/ucsc-blat/ucsc-blat.info @@ -7,4 +7,4 @@ DOWNLOAD_x86_64="http://hgwdev.cse.ucsc.edu/~kent/exe/opteron/blatSuite.34.zip" MD5SUM_x86_64="bf9042aa85a04ce85b24cef11011faee" REQUIRES="" MAINTAINER="Petar Petrov" -EMAIL="ppetrov@paju.oulu.fi" +EMAIL="slackalaxy@gmail.com" diff --git a/academic/ugene/ugene.SlackBuild b/academic/ugene/ugene.SlackBuild index 75a314a48cec1..63adecdde7206 100644 --- a/academic/ugene/ugene.SlackBuild +++ b/academic/ugene/ugene.SlackBuild @@ -2,7 +2,7 @@ # Slackware build script for ugene -# Copyright 2013-2015 Petar Petrov, petar.petrov@student.oulu.fi +# Copyright 2013-2016 Petar Petrov slackalaxy@gmail.com # All rights reserved. # # Redistribution and use of this script, with or without modification, is diff --git a/academic/ugene/ugene.info b/academic/ugene/ugene.info index 567d9657f2d6e..1bd33c04cd983 100644 --- a/academic/ugene/ugene.info +++ b/academic/ugene/ugene.info @@ -1,10 +1,10 @@ PRGNAM="ugene" VERSION="1.16.2" HOMEPAGE="http://ugene.unipro.ru/" -DOWNLOAD="http://pkgs.fedoraproject.org/lookaside/pkgs/ugene/ugene-1.16.2.tar.gz/b55a6f7194d6dd89469d9f2f4b92d8f1/ugene-1.16.2.tar.gz" +DOWNLOAD="https://sourceforge.net/projects/sboppetrov/files/ugene/ugene-1.16.2.tar.gz" MD5SUM="b55a6f7194d6dd89469d9f2f4b92d8f1" DOWNLOAD_x86_64="" MD5SUM_x86_64="" REQUIRES="" MAINTAINER="Petar Petrov" -EMAIL="petar.petrov@student.oulu.fi" +EMAIL="slackalaxy@gmail.com" diff --git a/academic/vcftools/vcftools.SlackBuild b/academic/vcftools/vcftools.SlackBuild index 7cfe136df6e78..47c61c7f7b7bb 100644 --- a/academic/vcftools/vcftools.SlackBuild +++ b/academic/vcftools/vcftools.SlackBuild @@ -2,7 +2,7 @@ # Slackware build script for vcftools -# Copyright 2013-2015 Petar Petrov, petar.petrov@student.oulu.fi +# Copyright 2013-2016 Petar Petrov slackalaxy@gmail.com # All rights reserved. # # Redistribution and use of this script, with or without modification, is diff --git a/academic/vcftools/vcftools.info b/academic/vcftools/vcftools.info index 9e3ee465affef..5525a67373d04 100644 --- a/academic/vcftools/vcftools.info +++ b/academic/vcftools/vcftools.info @@ -7,4 +7,4 @@ DOWNLOAD_x86_64="" MD5SUM_x86_64="" REQUIRES="tabix" MAINTAINER="Petar Petrov" -EMAIL="petar.petrov@student.oulu.fi" +EMAIL="slackalaxy@gmail.com" diff --git a/academic/zotero/zotero.SlackBuild b/academic/zotero/zotero.SlackBuild index 770b97944c30e..03a6cbaf067d5 100644 --- a/academic/zotero/zotero.SlackBuild +++ b/academic/zotero/zotero.SlackBuild @@ -1,8 +1,8 @@ #!/bin/sh -# Slackware build script for Zotero +# Slackware build script for zotero -# Copyright 2014-2015 Petar Petrov, petar.petrov@student.oulu.fi +# Copyright 2014-2016 Petar Petrov slackalaxy@gmail.com # All rights reserved. # # Redistribution and use of this script, with or without modification, is diff --git a/academic/zotero/zotero.info b/academic/zotero/zotero.info index a5ee7f0a76c16..fd4daa1d0d768 100644 --- a/academic/zotero/zotero.info +++ b/academic/zotero/zotero.info @@ -7,4 +7,4 @@ DOWNLOAD_x86_64="https://download.zotero.org/standalone/4.0.28/Zotero-4.0.28_lin MD5SUM_x86_64="55f743aa7c08ca16d933e91faf43a2fc" REQUIRES="" MAINTAINER="Petar Petrov" -EMAIL="petar.petrov@student.oulu.fi" +EMAIL="slackalaxy@gmail.com" |