academic/avogadro: Removed.

Signed-off-by: Dave Woodfall <dave@slackbuilds.org>

7 files changed, 0 insertions, 210 deletions

diff --git a/academic/avogadro/README b/academic/avogadro/README
deleted file mode 100644
index ef97a2fae01e5..0000000000000
--- a/academic/avogadro/README
+++ /dev/null
@@ -1,6 +0,0 @@
-Avogadro is a molecular graphics and modelling system targeted at
-molecules and biomolecules. It can visualize properties like molecular
-orbitals or electrostatic potentials and features an intuitive
-molecular builder.
-
-Optionally numpy can be installed for python support.
diff --git a/academic/avogadro/avogadro-1.1.1-python_openbabel.patch b/academic/avogadro/avogadro-1.1.1-python_openbabel.patch
deleted file mode 100644
index c819b08502e6d..0000000000000
--- a/academic/avogadro/avogadro-1.1.1-python_openbabel.patch
+++ /dev/null
@@ -1,14 +0,0 @@
-diff -up avogadro-1.1.1/libavogadro/src/python/CMakeLists.txt.openbabel avogadro-1.1.1/libavogadro/src/python/CMakeLists.txt
---- avogadro-1.1.1/libavogadro/src/python/CMakeLists.txt.openbabel	2013-12-06 09:50:04.000000000 -0600
-+++ avogadro-1.1.1/libavogadro/src/python/CMakeLists.txt	2016-01-25 13:50:10.469758655 -0600
-@@ -20,8 +20,8 @@ if (WIN32)
-   set_target_properties(python-module PROPERTIES SUFFIX ".pyd")
-   target_link_libraries(python-module avogadro ${PYTHON_LIBRARIES})
- else()
--  target_link_libraries(python-module stdc++ avogadro
--    ${QT_LIBRARIES} ${PYTHON_LIBRARIES} ${Boost_LIBRARIES})
-+  target_link_libraries(python-module stdc++ avogadro 
-+    ${QT_LIBRARIES} ${PYTHON_LIBRARIES} ${OPENBABEL2_LIBRARIES} ${Boost_LIBRARIES})
- endif()
- 
- # Let's try to use this instead:
diff --git a/academic/avogadro/avogadro-1.2.0-libmsym.patch b/academic/avogadro/avogadro-1.2.0-libmsym.patch
deleted file mode 100644
index 818b2e434bb44..0000000000000
--- a/academic/avogadro/avogadro-1.2.0-libmsym.patch
+++ /dev/null
@@ -1,29 +0,0 @@
-diff -Naur avogadro-1.2.0.orig/libavogadro/src/extensions/symmetry/libmsym/CMakeLists.txt avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/CMakeLists.txt
---- avogadro-1.2.0.orig/libavogadro/src/extensions/symmetry/libmsym/CMakeLists.txt	2016-06-08 14:19:45.000000000 +0000
-+++ avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/CMakeLists.txt	2016-08-01 04:18:55.910888721 +0000
-@@ -7,13 +7,13 @@
- set(LIBMSYM_PATCH_VERSION 0)
- set(LIBMSYM_VERSION ${LIBMSYM_MAJOR_VERSION}.${LIBMSYM_MINOR_VERSION}.${LIBMSYM_PATCH_VERSION})
- 
--set(INSTALL_LIB_DIR lib CACHE PATH "Installation directory for msym library")
-+set(INSTALL_LIB_DIR lib${LIB_SUFFIX} CACHE PATH "Installation directory for msym library")
- set(INSTALL_INCLUDE_DIR include CACHE PATH "Installation directory for header files")
- 
- if(WIN32 AND NOT CYGWIN)
-   set(DEF_INSTALL_CMAKE_DIR CMake)
- else()
--  set(DEF_INSTALL_CMAKE_DIR lib/cmake/libmsym)
-+  set(DEF_INSTALL_CMAKE_DIR lib${LIB_SUFFIX}/cmake/libmsym)
- endif()
- set(INSTALL_CMAKE_DIR ${DEF_INSTALL_CMAKE_DIR} CACHE PATH "Installation directory for CMake files")
- 
-@@ -29,6 +29,9 @@
- file (GLOB source src/*.c)
- add_library (msym ${source})
- if (BUILD_SHARED_LIBS)
-+        if(CMAKE_SYSTEM_NAME MATCHES Linux)
-+          target_link_libraries(msym m)
-+        endif()
-         set_target_properties (msym PROPERTIES
-                 POSITION_INDEPENDENT_CODE "TRUE")
- endif ()
diff --git a/academic/avogadro/avogadro.SlackBuild b/academic/avogadro/avogadro.SlackBuild
deleted file mode 100644
index ab79957b1aa08..0000000000000
--- a/academic/avogadro/avogadro.SlackBuild
+++ /dev/null
@@ -1,128 +0,0 @@
-#!/bin/bash
-
-# Slackware build script for Avogadro
-
-# Copyright 2010-2016 Larry Hajali <larryhaja[at]gmail[dot]com>
-# All rights reserved.
-#
-# Redistribution and use of this script, with or without modification, is
-# permitted provided that the following conditions are met:
-#
-# 1. Redistributions of this script must retain the above copyright
-#    notice, this list of conditions and the following disclaimer.
-#
-#  THIS SOFTWARE IS PROVIDED BY THE AUTHOR "AS IS" AND ANY EXPRESS OR IMPLIED
-#  WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF
-#  MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED.  IN NO
-#  EVENT SHALL THE AUTHOR BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,
-#  SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
-#  PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS;
-#  OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
-#  WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR
-#  OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF
-#  ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
-
-cd $(dirname $0) ; CWD=$(pwd)
-
-PRGNAM=avogadro
-VERSION=${VERSION:-1.2.0}
-BUILD=${BUILD:-1}
-TAG=${TAG:-_SBo}
-PKGTYPE=${PKGTYPE:-tgz}
-
-if [ -z "$ARCH" ]; then
-  case "$( uname -m )" in
-    i?86) ARCH=i486 ;;
-    arm*) ARCH=arm ;;
-       *) ARCH=$( uname -m ) ;;
-  esac
-fi
-
-# If the variable PRINT_PACKAGE_NAME is set, then this script will report what
-# the name of the created package would be, and then exit. This information
-# could be useful to other scripts.
-if [ ! -z "${PRINT_PACKAGE_NAME}" ]; then
-  echo "$PRGNAM-$VERSION-$ARCH-$BUILD$TAG.$PKGTYPE"
-  exit 0
-fi
-
-TMP=${TMP:-/tmp/SBo}
-PKG=$TMP/package-$PRGNAM
-OUTPUT=${OUTPUT:-/tmp}
-
-if [ "$ARCH" = "i486" ]; then
-  SLKCFLAGS="-O2 -march=i486 -mtune=i686"
-  LIBDIRSUFFIX=""
-elif [ "$ARCH" = "i686" ]; then
-  SLKCFLAGS="-O2 -march=i686 -mtune=i686"
-  LIBDIRSUFFIX=""
-elif [ "$ARCH" = "x86_64" ]; then
-  SLKCFLAGS="-O2 -fPIC"
-  LIBDIRSUFFIX="64"
-else
-  SLKCFLAGS="-O2"
-  LIBDIRSUFFIX=""
-fi
-
-set -e
-
-rm -rf $PKG
-mkdir -p $TMP $PKG $OUTPUT
-cd $TMP
-rm -rf $PRGNAM-$VERSION
-tar xvf $CWD/$PRGNAM-$VERSION.tar.gz
-cd $PRGNAM-$VERSION
-chown -R root:root .
-find -L . \
- \( -perm 777 -o -perm 775 -o -perm 750 -o -perm 711 -o -perm 555 \
-  -o -perm 511 \) -exec chmod 755 {} \; -o \
- \( -perm 666 -o -perm 664 -o -perm 640 -o -perm 600 -o -perm 444 \
-  -o -perm 440 -o -perm 400 \) -exec chmod 644 {} \;
-
-# Fix manpage directory.
-sed -i 's|share/man|man|' doc/CMakeLists.txt
-# Fix install directory and linking for libmsym library.
-patch -p1 < $CWD/avogadro-1.2.0-libmsym.patch
-
-# fix build (with recent swig/linker/python?)
-# http://pkgs.fedoraproject.org/cgit/rpms/avogadro.git/tree/avogadro-1.1.1-python_openbabel.patch
-patch -p1 < $CWD/avogadro-1.1.1-python_openbabel.patch
-
-mkdir -p build
-cd build
-  cmake \
-    -DCMAKE_INSTALL_PREFIX=/usr \
-    -DCMAKE_C_FLAGS:STRING="$SLKCFLAGS" \
-    -DCMAKE_CXX_FLAGS:STRING="$SLKCFLAGS" \
-    -DLIB_SUFFIX=${LIBDIRSUFFIX} \
-    -DENABLE_RPATH=OFF \
-    -DCMAKE_SKIP_RPATH=YES \
-    -DENABLE_GLSL:BOOL=ON \
-    -DENABLE_UPDATE_CHECKER=OFF \
-    -DENABLE_VERSIONED_PLUGIN_DIR:BOOL=OFF \
-    -DBUILD_SHARED_LIBS:BOOL=ON \
-    -DQT_MKSPECS_RELATIVE=lib${LIBDIRSUFFIX}/qt/mkspecs \
-    -DCMAKE_BUILD_TYPE=Release ..
-
-  make VERBOSE=1
-  make install DESTDIR=$PKG
-cd -
-
-find $PKG -print0 | xargs -0 file | grep -e "executable" -e "shared object" | grep ELF \
-  | cut -f 1 -d : | xargs strip --strip-unneeded 2> /dev/null || true
-
-find $PKG/usr/man -type f -exec gzip -9 {} \;
-
-mkdir -p $PKG/usr/doc/$PRGNAM-$VERSION
-cp -a \
-  AUTHORS COPYING INSTALL README \
-  libavogadro/src/extensions/gl2ps/{COPYING*,*.txt,*.pdf} \
-  $PKG/usr/doc/$PRGNAM-$VERSION
-cat $CWD/$PRGNAM.SlackBuild > $PKG/usr/doc/$PRGNAM-$VERSION/$PRGNAM.SlackBuild
-
-mkdir -p $PKG/install
-cat $CWD/slack-desc > $PKG/install/slack-desc
-cat $CWD/doinst.sh > $PKG/install/doinst.sh
-
-cd $PKG
-/sbin/makepkg -l y -c n $OUTPUT/$PRGNAM-$VERSION-$ARCH-$BUILD$TAG.$PKGTYPE
diff --git a/academic/avogadro/avogadro.info b/academic/avogadro/avogadro.info
deleted file mode 100644
index 68813ecc75325..0000000000000
--- a/academic/avogadro/avogadro.info
+++ /dev/null
@@ -1,10 +0,0 @@
-PRGNAM="avogadro"
-VERSION="1.2.0"
-HOMEPAGE="http://avogadro.cc/"
-DOWNLOAD="http://ponce.cc/slackware/sources/repo/avogadro-1.2.0.tar.gz"
-MD5SUM="3206068fc27bd3b717c568ee72f1e5ec"
-DOWNLOAD_x86_64=""
-MD5SUM_x86_64=""
-REQUIRES="openbabel"
-MAINTAINER="Larry Hajali"
-EMAIL="larryhaja[at]gmail[dot]com"
diff --git a/academic/avogadro/doinst.sh b/academic/avogadro/doinst.sh
deleted file mode 100644
index 4e8ba7071dea7..0000000000000
--- a/academic/avogadro/doinst.sh
+++ /dev/null
@@ -1,4 +0,0 @@
-if [ -x /usr/bin/update-desktop-database ]; then
-  /usr/bin/update-desktop-database -q usr/share/applications >/dev/null 2>&1
-fi
-
diff --git a/academic/avogadro/slack-desc b/academic/avogadro/slack-desc
deleted file mode 100644
index 50fba281d95cb..0000000000000
--- a/academic/avogadro/slack-desc
+++ /dev/null
@@ -1,19 +0,0 @@
-# HOW TO EDIT THIS FILE:
-# The "handy ruler" below makes it easier to edit a package description.
-# Line up the first '|' above the ':' following the base package name, and
-# the '|' on the right side marks the last column you can put a character in.
-# You must make exactly 11 lines for the formatting to be correct.  It's also
-# customary to leave one space after the ':' except on otherwise blank lines.
-
-        |-----handy-ruler------------------------------------------------------|
-avogadro: avogadro (An advanced molecular editor based on Qt 4.)
-avogadro:
-avogadro: Avogadro is a molecular graphics and modelling system targetted at
-avogadro: molecules and biomolecules. It can visualize properties like
-avogadro: molecular orbitals or electrostatic potentials and features an
-avogadro: intuitive molecular builder.
-avogadro:
-avogadro: Homepage: http://avogadro.cc/
-avogadro:
-avogadro:
-avogadro: