academic/umfpack: Updated for version 5.7.6.

Signed-off-by: Kyle Guinn <elyk03@gmail.com>

6 files changed, 92 insertions, 81 deletions

diff --git a/academic/umfpack/README b/academic/umfpack/README
index 0a47fa35a362b..954cb8b964c45 100644
--- a/academic/umfpack/README
+++ b/academic/umfpack/README
@@ -2,3 +2,13 @@ UMFPACK is a set of routines for solving unsymmetric sparse linear
 systems, Ax=b, using the Unsymmetric MultiFrontal method.
 
 This package is part of SuiteSparse.
+
+This requires a BLAS implementation.  Choose one of these package sets:
+ * OpenBLAS
+ * atlas
+ * blas (the Netlib reference implementation)
+If more than one set is installed (assuming there are no packaging conflicts)
+then the auto-detection will use the first implementation from this list that
+it finds.  If in doubt, choose the Netlib reference implementations; other
+packages that require a BLAS or LAPACK implementation may not build if they
+are not configured to detect/use alternate implementations.
diff --git a/academic/umfpack/atlas-threaded-blas.diff b/academic/umfpack/atlas-threaded-blas.diff
deleted file mode 100644
index e7f34ef011e3a..0000000000000
--- a/academic/umfpack/atlas-threaded-blas.diff
+++ /dev/null
@@ -1,26 +0,0 @@
-diff --git a/ax_blas.m4 b/ax_blas.m4
---- a/ax_blas.m4
-+++ b/ax_blas.m4
-@@ -117,12 +117,16 @@
- # BLAS in ATLAS library? (http://math-atlas.sourceforge.net/)
- if test $ax_blas_ok = no; then
- 	AC_CHECK_LIB(atlas, ATL_xerbla,
--		[AC_CHECK_LIB(f77blas, $sgemm,
--		[AC_CHECK_LIB(cblas, cblas_dgemm,
--			[ax_blas_ok=yes
--			 BLAS_LIBS="-lcblas -lf77blas -latlas"],
--			[], [-lf77blas -latlas])],
--			[], [-latlas])])
-+		[AC_CHECK_LIB(ptf77blas, $sgemm,
-+			[AC_CHECK_LIB(ptcblas, cblas_dgemm,
-+				[ax_blas_ok=yes; BLAS_LIBS="-lptcblas -lptf77blas -latlas"],,
-+				[-lptf77blas -latlas])],
-+			[AC_CHECK_LIB(f77blas, $sgemm,
-+				[AC_CHECK_LIB(cblas, cblas_dgemm,
-+					[ax_blas_ok=yes; BLAS_LIBS="-lcblas -lf77blas -latlas"],,
-+					[-lf77blas -latlas])],,
-+				[-latlas])],
-+			[-latlas])])
- fi
- 
- # BLAS in PhiPACK libraries? (requires generic BLAS lib, too)
diff --git a/academic/umfpack/patches/atlas-lib-rename.diff b/academic/umfpack/patches/atlas-lib-rename.diff
new file mode 100644
index 0000000000000..4801036f4673a
--- /dev/null
+++ b/academic/umfpack/patches/atlas-lib-rename.diff
@@ -0,0 +1,21 @@
+diff --git a/m4/ax_blas.m4 b/m4/ax_blas.m4
+--- a/m4/ax_blas.m4
++++ b/m4/ax_blas.m4
+@@ -116,13 +116,10 @@
+ 
+ # BLAS in ATLAS library? (http://math-atlas.sourceforge.net/)
+ if test $ax_blas_ok = no; then
+-	AC_CHECK_LIB(atlas, ATL_xerbla,
+-		[AC_CHECK_LIB(f77blas, $sgemm,
+-		[AC_CHECK_LIB(cblas, cblas_dgemm,
+-			[ax_blas_ok=yes
+-			 BLAS_LIBS="-lcblas -lf77blas -latlas"],
+-			[], [-lf77blas -latlas])],
+-			[], [-latlas])])
++	AC_CHECK_LIB(tatlas, $sgemm,
++		[ax_blas_ok=yes; BLAS_LIBS="-ltatlas"],
++		[AC_CHECK_LIB(satlas, $sgemm,
++			[ax_blas_ok=yes; BLAS_LIBS="-lsatlas"])])
+ fi
+ 
+ # BLAS in PhiPACK libraries? (requires generic BLAS lib, too)
diff --git a/academic/umfpack/autotoolize.diff b/academic/umfpack/patches/autotoolize.diff
index af8e9ab1adf4b..12ebc41fc2ead 100644
--- a/academic/umfpack/autotoolize.diff
+++ b/academic/umfpack/patches/autotoolize.diff
@@ -159,22 +159,22 @@ diff --git a/Doc/Makefile.am b/Doc/Makefile.am
 new file mode 100644
 --- /dev/null
 +++ b/Doc/Makefile.am
-@@ -0,0 +1,97 @@
+@@ -0,0 +1,101 @@
 +EXTRA_DIST = \
 +	ChangeLog \
-+	License \
++	License.txt \
 +	gpl.txt
 +
 +dist_noinst_DATA = \
-+	QuickStart.tex \
++	UMFPACK_QuickStart.tex \
 +	UserGuide.bib \
 +	UserGuide.sed1 \
 +	UserGuide.sed2 \
-+	UserGuide.stex
++	UMFPACK_UserGuide.stex
 +
 +dist_pdf_DATA = \
-+	QuickStart.pdf \
-+	UserGuide.pdf
++	UMFPACK_QuickStart.pdf \
++	UMFPACK_UserGuide.pdf
 +
 +# Unlike UserGuide.sed1, use \input{filename.tex} to insert the source code
 +# which we will construct below.  Also remove the \begin{verbatim} and
@@ -191,7 +191,7 @@ new file mode 100644
 +echo '\end{verbatim}' >> $@
 +endef
 +
-+UserGuide.tex: $(srcdir)/UserGuide.stex
++UMFPACK_UserGuide.tex: $(srcdir)/UMFPACK_UserGuide.stex
 +	$(sed1)
 +
 +_simple_c.tex: $(top_srcdir)/Demo/umfpack_simple.c
@@ -233,8 +233,12 @@ new file mode 100644
 +	_triplet_to_col_h.tex \
 +	_wsolve_h.tex
 +
-+.INTERMEDIATE: UserGuide.tex $(SRC)
-+UserGuide.tex: $(SRC)
++.INTERMEDIATE: UMFPACK_UserGuide.tex $(SRC)
++UMFPACK_UserGuide.tex: $(SRC)
++
++.INTERMEDIATE: UMFPACK_UserGuide.bib
++UMFPACK_UserGuide.bib: UserGuide.bib
++	$(LN_S) -f $< $@
 +
 +TEX = TEXINPUTS="$(srcdir):" pdflatex -interaction nonstopmode -file-line-error
 +BIB = BIBINPUTS="$(srcdir):" bibtex
@@ -249,13 +253,13 @@ new file mode 100644
 +	$(TEX) $*
 +
 +# QuickStart does not include a bibliography, so the above rule won't work.
-+QuickStart.pdf: %.pdf: %.tex
++UMFPACK_QuickStart.pdf: %.pdf: %.tex
 +	$(TEX) $*
 +	while grep -q "Rerun to get cross-references right" $*.log; do \
 +		$(TEX) $*; \
 +	done
 +
-+CLEANFILES = *.aux *.bbl *.blg *.log *.toc UserGuide.tex
++CLEANFILES = *.aux *.bbl *.blg *.log *.toc UMFPACK_UserGuide.tex
 +MAINTAINERCLEANFILES = $(dist_pdf_DATA)
 diff --git a/Include/Makefile.am b/Include/Makefile.am
 new file mode 100644
@@ -300,11 +304,10 @@ diff --git a/Makefile.am b/Makefile.am
 new file mode 100644
 --- /dev/null
 +++ b/Makefile.am
-@@ -0,0 +1,5 @@
+@@ -0,0 +1,4 @@
 +SUBDIRS = Include Source Demo Doc
 +EXTRA_DIST = README.txt
 +
-+pkgconfigdir = $(libdir)/pkgconfig
 +pkgconfig_DATA = umfpack.pc
 diff --git a/Source/Makefile.am b/Source/Makefile.am
 new file mode 100644
@@ -463,8 +466,8 @@ new file mode 100644
 +libumf_l_la_CPPFLAGS = $(AM_CPPFLAGS) -DDLONG
 +
 +if CHOLMOD
-+libumf_i_la_LIBADD = $(CHOLMOD_LIBS) -lgfortran
-+libumf_l_la_LIBADD = $(CHOLMOD_LIBS) -lgfortran
++libumf_i_la_LIBADD = $(CHOLMOD_LIBS)
++libumf_l_la_LIBADD = $(CHOLMOD_LIBS)
 +else
 +libumf_i_la_CPPFLAGS += -DNCHOLMOD
 +libumf_l_la_CPPFLAGS += -DNCHOLMOD
@@ -876,56 +879,48 @@ diff --git a/configure.ac b/configure.ac
 new file mode 100644
 --- /dev/null
 +++ b/configure.ac
-@@ -0,0 +1,75 @@
+@@ -0,0 +1,71 @@
 +#                                               -*- Autoconf -*-
 +# Process this file with autoconf to produce a configure script.
 +
 +AC_PREREQ([2.69])
-+AC_INIT([UMFPACK],[5.7.1],[DrTimothyAldenDavis@gmail.com],[umfpack],[http://www.suitesparse.com/])
++AC_INIT([UMFPACK],[5.7.6],[DrTimothyAldenDavis@gmail.com],[umfpack],[http://www.suitesparse.com/])
 +AC_CONFIG_SRCDIR([Source/umfpack_solve.c])
 +AC_CONFIG_HEADERS([config.h])
 +AM_INIT_AUTOMAKE([foreign])
 +LT_INIT
 +
 +# Checks for programs.
++PKG_PROG_PKG_CONFIG
 +AC_PROG_INSTALL
 +AC_PROG_CC
 +AC_PROG_F77
 +
-+AC_MSG_CHECKING([whether to use cholmod])
 +AC_ARG_WITH([cholmod],
 +	[AS_HELP_STRING(
 +		[--without-cholmod],
 +		[do not use CHOLMOD for ordering methods])],
-+	[cholmod=$withval],
-+	[cholmod="yes"])
-+AC_MSG_RESULT([$cholmod])
++	[],
++	[AS_VAR_SET([with_cholmod], [yes])])
 +
-+LIBS_SAVED=$LIBS
++AS_VAR_SET([LIBS_SAVED], [$LIBS])
 +
 +# Checks for libraries.
 +AC_CHECK_LIB([m], [sqrt])
 +
 +sinclude(ax_blas.m4)
-+AX_BLAS
-+if test "x$ax_blas_ok" != "xyes"; then
-+	AC_MSG_ERROR([cannot find blas])
-+fi
-+
-+PKG_PROG_PKG_CONFIG
-+PKG_CHECK_MODULES([SUITESPARSECONFIG],[suitesparseconfig],
-+	[],
-+	[AC_MSG_ERROR([cannot find suitesparseconfig])])
-+PKG_CHECK_MODULES([AMD],[amd],
++AX_BLAS(
 +	[],
-+	[AC_MSG_ERROR([cannot find amd])])
-+UMFPACK_REQUIRES="suitesparseconfig amd"
++	[AC_MSG_ERROR([cannot find BLAS])])
 +
-+if test "x$cholmod" = "xyes"; then
-+	PKG_CHECK_MODULES([CHOLMOD],[cholmod],
-+		[UMFPACK_REQUIRES="$UMFPACK_REQUIRES cholmod"],
-+		[AC_MSG_ERROR([cannot find cholmod])])
-+fi
++PKG_CHECK_MODULES([SUITESPARSECONFIG], [suitesparseconfig])
++PKG_CHECK_MODULES([AMD], [amd])
++AS_VAR_SET([UMFPACK_REQUIRES], ["suitesparseconfig amd"])
++
++AS_IF([test "x$with_cholmod" = "xyes"], [
++	PKG_CHECK_MODULES([CHOLMOD], [cholmod])
++	AS_VAR_APPEND([UMFPACK_REQUIRES], [" cholmod"])
++])
 +
 +# Checks for header files.
 +AC_CHECK_HEADERS([float.h stdlib.h string.h])
@@ -938,19 +933,23 @@ new file mode 100644
 +AC_FUNC_MALLOC
 +AC_CHECK_FUNCS([pow sqrt])
 +
-+LIBS=$LIBS_SAVED
++AS_VAR_SET([LIBS], [$LIBS_SAVED])
 +
-+AM_CONDITIONAL([CHOLMOD], [test "x$cholmod" = "xyes"])
++AC_MSG_CHECKING([whether to use CHOLMOD for ordering methods])
++AC_MSG_RESULT([$with_cholmod])
++AM_CONDITIONAL([CHOLMOD], [test "x$with_cholmod" = "xyes"])
 +
 +AC_SUBST([UMFPACK_REQUIRES])
 +
++PKG_INSTALLDIR
 +AC_CONFIG_FILES([
 +	umfpack.pc
 +	Makefile
 +	Demo/Makefile
 +	Doc/Makefile
 +	Include/Makefile
-+	Source/Makefile])
++	Source/Makefile
++])
 +AC_OUTPUT
 diff --git a/umfpack.pc.in b/umfpack.pc.in
 new file mode 100644
diff --git a/academic/umfpack/umfpack.SlackBuild b/academic/umfpack/umfpack.SlackBuild
index e2047a95615be..df3c7fddd19d2 100644
--- a/academic/umfpack/umfpack.SlackBuild
+++ b/academic/umfpack/umfpack.SlackBuild
@@ -25,14 +25,14 @@
 PRGNAM=umfpack
 SRCNAM=SuiteSparse
 SUBDIR=UMFPACK
-VERSION=${VERSION:-5.7.1}
-SRCVER=${SRCVER:-4.4.6}
-BUILD=${BUILD:-2}
+VERSION=${VERSION:-5.7.6}
+SRCVER=${SRCVER:-4.5.3}
+BUILD=${BUILD:-1}
 TAG=${TAG:-_SBo}
 
 if [ -z "$ARCH" ]; then
   case "$(uname -m)" in
-    i?86) ARCH=i486 ;;
+    i?86) ARCH=i586 ;;
     arm*) ARCH=arm ;;
        *) ARCH=$(uname -m) ;;
   esac
@@ -43,11 +43,14 @@ TMP=${TMP:-/tmp/SBo}
 PKG=$TMP/package-$PRGNAM
 OUTPUT=${OUTPUT:-/tmp}
 
-DOCS="README.txt Doc/ChangeLog Doc/License Doc/gpl.txt"
+DOCS="README.txt Doc/ChangeLog Doc/License.txt Doc/gpl.txt"
 
 if [ "$ARCH" = "i486" ]; then
   SLKCFLAGS="-O2 -march=i486 -mtune=i686"
   LIBDIRSUFFIX=""
+elif [ "$ARCH" = "i586" ]; then
+  SLKCFLAGS="-O2 -march=i586 -mtune=i686"
+  LIBDIRSUFFIX=""
 elif [ "$ARCH" = "i686" ]; then
   SLKCFLAGS="-O2 -march=i686 -mtune=i686"
   LIBDIRSUFFIX=""
@@ -73,12 +76,14 @@ cd $SRCNAM/$SUBDIR
 chown -R root:root .
 chmod -R u+w,go-w,a+rX-st .
 
-patch -p1 < $CWD/autotoolize.diff
-patch -p1 < $CWD/atlas-threaded-blas.diff
+patch -p1 < $CWD/patches/autotoolize.diff
+patch -p2 < $CWD/patches/atlas-lib-rename.diff
 autoreconf -vif
 
-CFLAGS="$SLKCFLAGS" \
-FFLAGS="$SLKCFLAGS" \
+# Avoid rebuilding the docs.
+touch Doc/UMFPACK_QuickStart.pdf
+touch Doc/UMFPACK_UserGuide.pdf
+
 ./configure \
   --prefix=/usr \
   --libdir=/usr/lib${LIBDIRSUFFIX} \
@@ -90,7 +95,9 @@ FFLAGS="$SLKCFLAGS" \
   --enable-shared \
   --disable-static \
   --disable-dependency-tracking \
-  --build=$ARCH-slackware-linux
+  --build=$ARCH-slackware-linux \
+  CFLAGS="$SLKCFLAGS" \
+  FFLAGS="$SLKCFLAGS" \
 
 make
 make check
diff --git a/academic/umfpack/umfpack.info b/academic/umfpack/umfpack.info
index af4a1e1e185d3..13bdea94b9788 100644
--- a/academic/umfpack/umfpack.info
+++ b/academic/umfpack/umfpack.info
@@ -1,8 +1,8 @@
 PRGNAM="umfpack"
-VERSION="5.7.1"
+VERSION="5.7.6"
 HOMEPAGE="http://faculty.cse.tamu.edu/davis/suitesparse.html"
-DOWNLOAD="http://faculty.cse.tamu.edu/davis/SuiteSparse/SuiteSparse-4.4.6.tar.gz"
-MD5SUM="131a3a5e2dee784cd946284e44ce9af2"
+DOWNLOAD="http://faculty.cse.tamu.edu/davis/SuiteSparse/SuiteSparse-4.5.3.tar.gz"
+MD5SUM="8ec57324585df3c6483ad7f556afccbd"
 DOWNLOAD_x86_64=""
 MD5SUM_x86_64=""
 REQUIRES="blas suitesparseconfig amd cholmod"