diff options
| author | Matteo Bernardini <ponce@slackbuilds.org> | 2017-07-26 17:54:50 +0200 |
|---|---|---|
| committer | Robby Workman <rworkman@slackbuilds.org> | 2021-04-18 00:03:07 -0500 |
| commit | 9ea2c40eee44ab99d9e34c9acfac0f4ee138a493 (patch) | |
| tree | a94113554a3b058e1c515b25fa5aac23f6320823 /academic/ugene | |
| parent | 5b57c6efd35dcbfb72e987549356d3a4277c3ef5 (diff) | |
academic/ugene: Patch to avoid hardcoding headers location.
Signed-off-by: Matteo Bernardini <ponce@slackbuilds.org>
Diffstat (limited to 'academic/ugene')
| -rw-r--r-- | academic/ugene/ugene-1.22.0-dont_hardcode_includes.patch | 24 | ||||
| -rw-r--r-- | academic/ugene/ugene.SlackBuild | 3 |
2 files changed, 27 insertions, 0 deletions
diff --git a/academic/ugene/ugene-1.22.0-dont_hardcode_includes.patch b/academic/ugene/ugene-1.22.0-dont_hardcode_includes.patch new file mode 100644 index 0000000000000..6bc26e1f1975d --- /dev/null +++ b/academic/ugene/ugene-1.22.0-dont_hardcode_includes.patch @@ -0,0 +1,24 @@ +diff -up ugene-1.22.0/src/libs_3rdparty/samtools/samtools.pri.dont_hardcode_includes ugene-1.22.0/src/libs_3rdparty/samtools/samtools.pri +--- ugene-1.22.0/src/libs_3rdparty/samtools/samtools.pri.dont_hardcode_includes 2016-03-31 07:21:56.000000000 -0500 ++++ ugene-1.22.0/src/libs_3rdparty/samtools/samtools.pri 2016-06-02 17:49:02.383069490 -0500 +@@ -3,7 +3,7 @@ UGENE_RELATIVE_DESTDIR = '' + + TEMPLATE = lib + CONFIG +=thread debug_and_release staticlib warn_off +-INCLUDEPATH += src src/samtools ../../include /usr/include ++INCLUDEPATH += src src/samtools ../../include + win32 : INCLUDEPATH += src/samtools/win32 + DEFINES+="_FILE_OFFSET_BITS=64" _LARGEFILE64_SOURCE _USE_KNETFILE + win32 : DEFINES += _USE_MATH_DEFINES "inline=__inline" "__func__=__FUNCTION__" "R_OK=4" "atoll=_atoi64" "alloca=_alloca" +diff -up ugene-1.22.0/src/plugins_3rdparty/variants/variants.pri.dont_hardcode_includes ugene-1.22.0/src/plugins_3rdparty/variants/variants.pri +--- ugene-1.22.0/src/plugins_3rdparty/variants/variants.pri.dont_hardcode_includes 2016-03-31 07:22:09.000000000 -0500 ++++ ugene-1.22.0/src/plugins_3rdparty/variants/variants.pri 2016-06-02 20:26:35.265356432 -0500 +@@ -20,7 +20,7 @@ use_bundled_zlib() { + win32 : LIBS += -lwsock32 + + +-INCLUDEPATH += src ../../include /usr/include ++INCLUDEPATH += src ../../include + INCLUDEPATH += ../../libs_3rdparty/samtools/src/samtools + INCLUDEPATH += ../../libs_3rdparty/samtools/src + INCLUDEPATH += ../../libs_3rdparty/samtools/src/samtools/bcftools diff --git a/academic/ugene/ugene.SlackBuild b/academic/ugene/ugene.SlackBuild index 45a5a5885adb8..9ebc39636d69e 100644 --- a/academic/ugene/ugene.SlackBuild +++ b/academic/ugene/ugene.SlackBuild @@ -73,6 +73,9 @@ find -L . \ \( -perm 666 -o -perm 664 -o -perm 640 -o -perm 600 -o -perm 444 \ -o -perm 440 -o -perm 400 \) -exec chmod 644 {} \; +# Thanks fedora +patch -p1 < $CWD/ugene-1.22.0-dont_hardcode_includes.patch + # Fix libraries and man pages paths sed -i "s:/lib:/lib${LIBDIRSUFFIX}:g" src/ugene_globals.pri sed -i "s:/share/man:/man:g" src/ugene_globals.pri |