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authorPetar Petrov <petar.petrov@student.oulu.fi>2015-03-27 15:28:40 +0700
committerWilly Sudiarto Raharjo <willysr@slackbuilds.org>2015-03-27 15:28:40 +0700
commit812815694128a9ff596bb117b6a92decc2767707 (patch)
treec0f5c4368937552461490173f31cea9294f135a1 /academic/ugene
parent3f04be71a0a920e11d5d706875c0a8810a2f685b (diff)
academic/ugene: Updated for version 1.16.1.
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
Diffstat (limited to 'academic/ugene')
-rw-r--r--academic/ugene/README4
-rw-r--r--academic/ugene/slack-desc2
-rw-r--r--academic/ugene/ugene.SlackBuild2
-rw-r--r--academic/ugene/ugene.info6
4 files changed, 9 insertions, 5 deletions
diff --git a/academic/ugene/README b/academic/ugene/README
index 74e8a62736fa9..a163595629255 100644
--- a/academic/ugene/README
+++ b/academic/ugene/README
@@ -37,10 +37,14 @@ program. Almost all of them can be found at SlackBuilds.org:
- clustalo (Clustal Omega)
- clustalw (Multiple Sequence Alignment)
- cufflinks (A reference-guided assembler for RNA-Seq experiments)
+- cutadapt (Trim adapters from high-throughput sequencing reads)
+- fastqc (A quality control tool for high throughput sequence data)
- ncbi-blast (BLAST: Basic Local Alignment Search Tool)
- ncbi-blast-plus (BLAST+ Command Line Applications)
- PhyML (Phylogenetic estimation using Maximum Likelihood)
- samtools (Sequence Alignment/Map Tools)
+- snpEff (Genetic variant annotation and effect prediction toolbox)
+- spades (SPAdes Genome Assembler)
- spidey (mRNA-to-genomic alignment)
- t_coffee (A multiple sequence alignment program)
- tabix (Generic indexer for TAB-delimited genome position files )
diff --git a/academic/ugene/slack-desc b/academic/ugene/slack-desc
index a2a9314c8a40a..8750636927eac 100644
--- a/academic/ugene/slack-desc
+++ b/academic/ugene/slack-desc
@@ -16,4 +16,4 @@ ugene: user nterface. The toolkit supports multiple biological data formats
ugene: and allows the retrieval of data from remote data sources.
ugene:
ugene: Home: http://ugene.unipro.ru/
-ugene: References: /usr/doc/ugene-1.15.1/References
+ugene: References: /usr/doc/ugene-1.16.1/References
diff --git a/academic/ugene/ugene.SlackBuild b/academic/ugene/ugene.SlackBuild
index da4ed2f7af6b0..0c2ccc3c1afed 100644
--- a/academic/ugene/ugene.SlackBuild
+++ b/academic/ugene/ugene.SlackBuild
@@ -23,7 +23,7 @@
# ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
PRGNAM=ugene
-VERSION=${VERSION:-1.15.1}
+VERSION=${VERSION:-1.16.1}
BUILD=${BUILD:-1}
TAG=${TAG:-_SBo}
diff --git a/academic/ugene/ugene.info b/academic/ugene/ugene.info
index 3f35ecb453c42..68dc9570aae12 100644
--- a/academic/ugene/ugene.info
+++ b/academic/ugene/ugene.info
@@ -1,8 +1,8 @@
PRGNAM="ugene"
-VERSION="1.15.1"
+VERSION="1.16.1"
HOMEPAGE="http://ugene.unipro.ru/"
-DOWNLOAD="http://ugene.unipro.ru/downloads/ugene-1.15.1.tar.gz"
-MD5SUM="7269c1f49cfdb5911ce7d8904b6c6af3"
+DOWNLOAD="http://ugene.unipro.ru/downloads/ugene-1.16.1.tar.gz"
+MD5SUM="f4856b22228c83c9f8a5341afb5825c5"
DOWNLOAD_x86_64=""
MD5SUM_x86_64=""
REQUIRES=""