diff options
| author | Petar Petrov <slackalaxy@gmail.com> | 2023-09-10 21:23:07 +0900 |
|---|---|---|
| committer | Willy Sudiarto Raharjo <willysr@slackbuilds.org> | 2023-09-17 00:10:15 +0700 |
| commit | e53b8b3d71d21e2b4077e6b5b21f939c91f412ef (patch) | |
| tree | 19d66676955f5921513b64fdf75cd968a0e4507e /academic/ugene | |
| parent | 3cd21afae3af414ec627988cd64381e5c4e3da4e (diff) | |
academic/ugene: Updated for version 48.1.
Signed-off-by: Andrew Clemons <andrew.clemons@gmail.com>
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
Diffstat (limited to 'academic/ugene')
| -rw-r--r-- | academic/ugene/README | 3 | ||||
| -rw-r--r-- | academic/ugene/ugene.SlackBuild | 2 | ||||
| -rw-r--r-- | academic/ugene/ugene.info | 6 |
3 files changed, 7 insertions, 4 deletions
diff --git a/academic/ugene/README b/academic/ugene/README index 6ef0504bd45cb..181b31865121f 100644 --- a/academic/ugene/README +++ b/academic/ugene/README @@ -43,8 +43,10 @@ program. All of them are available at SlackBuilds.org: - cufflinks (A reference-guided assembler for RNA-Seq experiments) - cutadapt (Trim adapters from high-throughput sequencing reads) - fastqc (A quality control tool for high throughput sequence data) +- FastTree (Infers approximately-ML phylogenetic trees) - HMMER (Biosequence analysis using profile hidden Markov models) - iqtree (Efficient and versatile phylogenomic software by ML) +- kalign (A fast multiple sequence alignment program) - MetaPhlAn2 (Metagenomic Phylogenetic Analysis) - mafft (A multiple sequence alignment program) - mrbayes (MrBayes: Bayesian Inference of Phylogeny) @@ -54,6 +56,7 @@ program. All of them are available at SlackBuilds.org: - snpEff (Genetic variant annotation and effect prediction toolbox) - spades (SPAdes Genome Assembler) - spidey (mRNA-to-genomic alignment) +- stringtie (Assembler of RNA-Seq alignments) - t_coffee (A multiple sequence alignment program) - tabix-legacy (Generic indexer for TAB-delimited genome position files) - tophat (Splice junction mapper for RNA-Seq reads) diff --git a/academic/ugene/ugene.SlackBuild b/academic/ugene/ugene.SlackBuild index 2c68cd3f1619e..3a6f9ff2808e5 100644 --- a/academic/ugene/ugene.SlackBuild +++ b/academic/ugene/ugene.SlackBuild @@ -25,7 +25,7 @@ cd $(dirname $0) ; CWD=$(pwd) PRGNAM=ugene -VERSION=${VERSION:-47.0} +VERSION=${VERSION:-48.1} BUILD=${BUILD:-1} TAG=${TAG:-_SBo} PKGTYPE=${PKGTYPE:-tgz} diff --git a/academic/ugene/ugene.info b/academic/ugene/ugene.info index b57f583e2b278..8f9bf4bdf673e 100644 --- a/academic/ugene/ugene.info +++ b/academic/ugene/ugene.info @@ -1,10 +1,10 @@ PRGNAM="ugene" -VERSION="47.0" +VERSION="48.1" HOMEPAGE="http://ugene.net/" DOWNLOAD="UNSUPPORTED" MD5SUM="" -DOWNLOAD_x86_64="https://github.com/ugeneunipro/ugene/archive/47.0/ugene-47.0.tar.gz" -MD5SUM_x86_64="abcfd6602f5b2741ee45ff566ef17125" +DOWNLOAD_x86_64="https://github.com/ugeneunipro/ugene/archive/48.1/ugene-48.1.tar.gz" +MD5SUM_x86_64="5662a9e58d6ad19a8be7410f12139072" REQUIRES="" MAINTAINER="Petar Petrov" EMAIL="slackalaxy@gmail.com" |