diff options
| author | Petar Petrov <slackalaxy@gmail.com> | 2016-06-05 15:52:22 +0300 |
|---|---|---|
| committer | Willy Sudiarto Raharjo <willysr@slackbuilds.org> | 2016-06-05 22:28:04 +0700 |
| commit | a2d9c58b502099a081d58b0664334fa44b8bde2f (patch) | |
| tree | 1098fd3502ae47e577eae4ef78bc3df06feeec1b /academic/ugene/README | |
| parent | b6456152b10e4c01ee304557130dc8b19747186a (diff) | |
academic/ugene: Updated for version 1.22.0
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
Diffstat (limited to 'academic/ugene/README')
| -rw-r--r-- | academic/ugene/README | 18 |
1 files changed, 11 insertions, 7 deletions
diff --git a/academic/ugene/README b/academic/ugene/README index a163595629255..5ed2a5eaa6fb1 100644 --- a/academic/ugene/README +++ b/academic/ugene/README @@ -21,19 +21,28 @@ be launched on local resources or in a High Performance Computing built-in plugin system and structured UGENE API make it possible to extend the toolkit with new functionality. +CITING: +Unipro UGENE: a unified bioinformatics toolkit +Konstantin Okonechnikov; Olga Golosova; Mikhail Fursov; the UGENE team +Bioinformatics 2012 28: 1166-1167 + EXTERNAL TOOLS UGENE can use and drive a number of external tools, providing a nice and unified GUI. These are not needed at build time, but are highly recommended for the complete (and extended) functionality of the -program. Almost all of them can be found at SlackBuilds.org: +program. All of them are available at SlackBuilds.org: +- bedGraphToBigWig (Convert bedGraph to bigWig file) - bedtools (A powerful toolset for genome arithmetic) - bowtie (A short read aligner of DNA sequences) - bowtie2 (A tool for aligning sequencing reads) - bwa (Burrows-Wheeler Aligner) - cap3 (CAP3: A DNA sequence assembly program) - cistrome-CEAS (CEAS: Cis-regulatory Element Annotation System) +- cistrome-conductGO (Find the top-n highest expressed TFs) +- cistrome-extra (Cistrome Applications Harvard extra apps) - cistrome-MACS (MACS: Model-based Analysis of ChIP-Seq) +- cistrome-mdseqpos (Cistrome Applications Harvard mdseqpos) - clustalo (Clustal Omega) - clustalw (Multiple Sequence Alignment) - cufflinks (A reference-guided assembler for RNA-Seq experiments) @@ -52,9 +61,4 @@ program. Almost all of them can be found at SlackBuilds.org: - vcftools (A program package designed for working with VCF files) Alternatively, check the program's website if you want to get them -precompiled. - -CITING: -Unipro UGENE: a unified bioinformatics toolkit -Konstantin Okonechnikov; Olga Golosova; Mikhail Fursov; the UGENE team -Bioinformatics 2012 28: 1166-1167 +precompiled: http://ugene.net/external.html |