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| author | Petar Petrov <petar.petrov@student.oulu.fi> | 2013-12-14 09:25:10 +0700 |
|---|---|---|
| committer | Erik Hanson <erik@slackbuilds.org> | 2013-12-14 10:53:06 -0600 |
| commit | 3c78f7406816fcf7ed0664031e676725c5e469e7 (patch) | |
| tree | 893f98be26eb3c6d093cedd6ebd66209e013a71e /academic/tabix/README | |
| parent | 6971ab3785168852dc4c107aeacc42a68dfd9c88 (diff) | |
academic/tabix: Added (Generic indexer).
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
Diffstat (limited to 'academic/tabix/README')
| -rw-r--r-- | academic/tabix/README | 8 |
1 files changed, 8 insertions, 0 deletions
diff --git a/academic/tabix/README b/academic/tabix/README new file mode 100644 index 000000000000..143a5d568476 --- /dev/null +++ b/academic/tabix/README @@ -0,0 +1,8 @@ +Tabix indexes a TAB-delimited genome position file in.tab.bgz and +creates an index file in.tab.bgz.tbi when region is absent from the +command-line. The input data file must be position sorted and +compressed by bgzip which has a gzip like interface. After indexing, +tabix is able to quickly retrieve data lines overlapping regions +specified in the format "chr:beginPos-endPos". Fast data retrieval +also works over network if URI is given as a file name and in this +case the index file will be downloaded if it is not present locally. |