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| author | Petar Petrov <slackalaxy@gmail.com> | 2018-12-24 10:56:58 +0700 |
|---|---|---|
| committer | Willy Sudiarto Raharjo <willysr@slackbuilds.org> | 2018-12-24 22:16:45 +0700 |
| commit | 201f40382197fbf0baf90fbafd016efb5567a7f8 (patch) | |
| tree | 8d86bb1b32d42246d527c56d331b909193406f77 /academic/tabix-legacy/README | |
| parent | a2f175aa89ea5182c12533868eff30f293a4d783 (diff) | |
| download | slackbuilds-201f40382197fbf0baf90fbafd016efb5567a7f8.tar.xz | |
academic/tabix-legacy: Added (Generic indexer).
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
Diffstat (limited to 'academic/tabix-legacy/README')
| -rw-r--r-- | academic/tabix-legacy/README | 14 |
1 files changed, 14 insertions, 0 deletions
diff --git a/academic/tabix-legacy/README b/academic/tabix-legacy/README new file mode 100644 index 000000000000..ca2ddbbe869b --- /dev/null +++ b/academic/tabix-legacy/README @@ -0,0 +1,14 @@ +Tabix indexes a TAB-delimited genome position file in.tab.bgz and +creates an index file in.tab.bgz.tbi when region is absent from the +command-line. The input data file must be position sorted and +compressed by bgzip which has a gzip like interface. After indexing, +tabix is able to quickly retrieve data lines overlapping regions +specified in the format "chr:beginPos-endPos". Fast data retrieval +also works over network if URI is given as a file name and in this +case the index file will be downloaded if it is not present locally. + +NOTE! +Tabix is now included in htslib. This is an older version of the +program, kept here for compatibility with Ugene. You can safely install +it along htslib. When you start Ugene, go to Settings > Preferences > +External Tools and manually select the legacy binary in /usr/bin/ |