academic/sequence-analysis: Added (Biologic sequences analysis)

Signed-off-by: Niels Horn <niels.horn@slackbuilds.org>

7 files changed, 83 insertions, 0 deletions

diff --git a/academic/sequence-analysis/README b/academic/sequence-analysis/README
new file mode 100644
index 000000000000..82dab2ac4c96
--- /dev/null
+++ b/academic/sequence-analysis/README
@@ -0,0 +1 @@
+A collage of coding projects for biologic sequences analysis.
diff --git a/academic/sequence-analysis/doinst.sh b/academic/sequence-analysis/doinst.sh
new file mode 100644
index 000000000000..01ca62b34190
--- /dev/null
+++ b/academic/sequence-analysis/doinst.sh
@@ -0,0 +1,3 @@
+if [ -x /usr/bin/update-desktop-database ]; then
+  /usr/bin/update-desktop-database -q usr/share/applications >/dev/null 2>&1
+fi
\ No newline at end of file
diff --git a/academic/sequence-analysis/sequence-analysis.SlackBuild b/academic/sequence-analysis/sequence-analysis.SlackBuild
new file mode 100644
index 000000000000..a88e01a25b1b
--- /dev/null
+++ b/academic/sequence-analysis/sequence-analysis.SlackBuild
@@ -0,0 +1,43 @@
+#!/bin/sh
+
+# Slackware build script for sequence-analysis
+# Written by Petar Petrov, <ppetrov@paju.oulu.fi> and 
+# hereby submitted to the public domain
+
+# THIS SLACKBUILD IS DISTRIBUTETD IN THE HOPE OF BEING 
+# USEFUL BUT WITHOUT ANY WARRANTY. THE AUTHOR IS _NOT_ 
+# RESPONSIBLE FOR ANY DAMAGE OR DATA LOSS CAUSED BY IT.
+
+PRGNAM=sequence-analysis		
+VERSION=${VERSION:-1.6.0}
+ARCH=noarch
+BUILD=${BUILD:-1}
+TAG=${TAG:-_SBo}	
+
+CWD=$(pwd)
+TMP=${TMP:-/tmp/SBo}	
+PKG=$TMP/package-$PRGNAM
+OUTPUT=${OUTPUT:-/tmp}	
+
+set -e
+
+rm -rf $PKG
+mkdir -p $TMP $PKG $OUTPUT
+cd $TMP
+
+install -D -m755 $CWD/sa.jar $PKG/usr/bin/$PRGNAM.jar
+
+mkdir -p $PKG/usr/doc/$PRGNAM-$VERSION
+cat $CWD/$PRGNAM.SlackBuild > $PKG/usr/doc/$PRGNAM-$VERSION/$PRGNAM.SlackBuild
+
+# Menu item and icon
+mkdir -p $PKG/usr/share/{applications,pixmaps}
+cp $CWD/$PRGNAM.desktop $PKG/usr/share/applications
+cp $CWD/$PRGNAM.png $PKG/usr/share/pixmaps
+
+mkdir -p $PKG/install
+cat $CWD/slack-desc > $PKG/install/slack-desc
+cat $CWD/doinst.sh > $PKG/install/doinst.sh
+
+cd $PKG
+/sbin/makepkg -l y -c n $OUTPUT/$PRGNAM-$VERSION-$ARCH-$BUILD$TAG.${PKGTYPE:-tgz}
diff --git a/academic/sequence-analysis/sequence-analysis.desktop b/academic/sequence-analysis/sequence-analysis.desktop
new file mode 100644
index 000000000000..20a23697a45e
--- /dev/null
+++ b/academic/sequence-analysis/sequence-analysis.desktop
@@ -0,0 +1,7 @@
+[Desktop Entry]
+Categories=Education;
+Exec="java -jar /usr/bin/sequence-analysis.jar -Xms512m -Xmx1024m"
+Icon=sequence-analysis.png
+Name=Sequence Analysis
+StartupNotify=false
+Type=Application
diff --git a/academic/sequence-analysis/sequence-analysis.info b/academic/sequence-analysis/sequence-analysis.info
new file mode 100644
index 000000000000..aaaada46002e
--- /dev/null
+++ b/academic/sequence-analysis/sequence-analysis.info
@@ -0,0 +1,10 @@
+PRGNAM="sequence-analysis"
+VERSION="1.6.0"
+HOMEPAGE="http://informagen.com/SA/"
+DOWNLOAD="http://informagen.com/SA/sa.jar"
+MD5SUM="48609bfdd0d689cc62467159a0308886"
+DOWNLOAD_x86_64=""
+MD5SUM_x86_64=""
+MAINTAINER="Petar Petrov"
+EMAIL="ppetrov@paju.oulu.fi"
+APPROVED="Niels Horn"
diff --git a/academic/sequence-analysis/sequence-analysis.png b/academic/sequence-analysis/sequence-analysis.png
new file mode 100644
index 000000000000..d242a7c0488f
--- /dev/null
+++ b/academic/sequence-analysis/sequence-analysis.png
diff --git a/academic/sequence-analysis/slack-desc b/academic/sequence-analysis/slack-desc
new file mode 100644
index 000000000000..325951ad3a99
--- /dev/null
+++ b/academic/sequence-analysis/slack-desc
@@ -0,0 +1,19 @@
+# HOW TO EDIT THIS FILE:
+# The "handy ruler" below makes it easier to edit a package description.  Line
+# up the first '|' above the ':' following the base package name, and the '|'
+# on the right side marks the last column you can put a character in.  You must
+# make exactly 11 lines for the formatting to be correct.  It's also
+# customary to leave one space after the ':'.
+
+                 |-----handy-ruler------------------------------------------------------|
+sequence-analysis: sequence-analysis (Biologic sequences analysis)
+sequence-analysis:
+sequence-analysis: A collage of coding projects for biologic sequences analysis.
+sequence-analysis:
+sequence-analysis:
+sequence-analysis:
+sequence-analysis:
+sequence-analysis:
+sequence-analysis:
+sequence-analysis:
+sequence-analysis: Home: http://informagen.com/SA/