academic/seaview: Updated for version 5.0.

Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>

1 files changed, 18 insertions, 23 deletions

diff --git a/academic/seaview/README b/academic/seaview/README
index 70a537171c29..e72249f56340 100644
--- a/academic/seaview/README
+++ b/academic/seaview/README
@@ -1,28 +1,23 @@
 SeaView is a multiplatform, graphical user interface for multiple
-sequence alignment and molecular phylogeny. Important features are:
+sequence alignment and molecular phylogeny. Features:
 
-1) SeaView reads and writes various file formats (NEXUS, MSF, CLUSTAL,
-   FASTA, PHYLIP, MASE, Newick) of DNA and protein sequences and of
-   phylogenetic trees.
-
-2) SeaView drives programs muscle or Clustal Omega (clustalo) for
-   multiple sequence alignment, and also allows to use any external
-   alignment algorithm able to read and write FASTA-formatted files.
-
-3) Seaview drives the Gblocks program to select blocks of
-   evolutionarily conserved sites.
-
-4) SeaView computes phylogenetic trees by
-   a) parsimony, using PHYLIP's dnapars/protpars algorithm
-   b) distance, with NJ or BioNJ algorithms on a variety of
-   evolutionary distances,
-   c) maximum likelihood, driving program PhyML
-
-5) SeaView prints and draws phylogenetic trees on screen, SVG, PDF or
-   PostScript files.
-
-6) SeaView allows to download sequences from EMBL/GenBank/UniProt
-   using the Internet.
+- Reads and writes various file formats (NEXUS, MSF, CLUSTAL, FASTA,
+  PHYLIP, MASE, Newick) of DNA and protein sequences and of phylogenetic
+  trees.
+- Drives programs muscle or Clustal Omega for multiple sequence
+  alignment, and also allows to use any external alignment
+  algorithm able to read and write FASTA-formatted files.
+- Drives the Gblocks program to select blocks of evolutionarily
+  conserved sites.
+- Computes phylogenetic trees by parsimony, using PHYLIP's dnapars /
+  protpars algorithm, distance, with NJ or BioNJ algorithms on a variety
+  of evolutionary distances, maximum likelihood, driving program PhyML
+- Can use the Transfer Bootstrap Expectation method to compute the
+  bootstrap support of PhyML and distance trees.
+- Uses the Treerecs method to reconcile gene and species trees.
+- Prints and draws phylogenetic trees on screen, SVG, PDF or PostScript
+  files.
+- Allows to download sequences from EMBL / GenBank / UniProt.
 
 For details and citation:
 Gouy M., Guindon S. & Gascuel O. (2010) SeaView version 4 : a