academic/scidavis: Added (data analysis and visualization).

Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>

7 files changed, 222 insertions, 0 deletions

diff --git a/academic/scidavis/README b/academic/scidavis/README
new file mode 100644
index 0000000000000..60a6565565f07
--- /dev/null
+++ b/academic/scidavis/README
@@ -0,0 +1,10 @@
+SciDAVis (data analysis and visualization)
+
+SciDAVis is a free interactive application aimed at data analysis and
+publication-quality plotting. It combines a shallow learning curve and
+an intuitive, easy-to-use graphical user interface with powerful
+features such as scriptability and extensibility.
+
+SciDAVis started as a fork of QtiPlot.
+
+Optional dependencies are numpy and scipy (to improve python scripting)
diff --git a/academic/scidavis/correction_to_use_qwt5.patch b/academic/scidavis/correction_to_use_qwt5.patch
new file mode 100644
index 0000000000000..3706a382e3ef4
--- /dev/null
+++ b/academic/scidavis/correction_to_use_qwt5.patch
@@ -0,0 +1,15 @@
+--- config.pri	2016-07-28 22:17:44.000000000 -0300
++++ config.pri.new	2016-12-12 16:43:50.000000000 -0200
+@@ -280,12 +280,8 @@
+ 
+ 	exists(/usr/include/qwt5) {
+ 		INCLUDEPATH  += /usr/include/qwt5
+-                exists(/usr/lib*/libqwt5.*) {
+                       LIBS         += -lqwt5
+                 } else {
+-                      LIBS += -lqwt
+-                }
+-	} else {
+ 		INCLUDEPATH  += /usr/include/qwt$${qwtsuff}
+ 		LIBS         += -lqwt$${qwtsuff}
+ 	}
diff --git a/academic/scidavis/desktop_integration.txt b/academic/scidavis/desktop_integration.txt
new file mode 100644
index 0000000000000..029fc66f8303b
--- /dev/null
+++ b/academic/scidavis/desktop_integration.txt
@@ -0,0 +1,36 @@
+###################### DESKTOP INTEGRATION ##################################
+
+unix {
+	desktop_entry.files = scidavis.desktop
+	desktop_entry.path = "$$INSTALLBASE/share/applications"
+
+	mime_package.files = scidavis.xml
+	mime_package.path = "$$INSTALLBASE/share/mime/packages"
+
+	#deprecated
+	mime_link.files = x-sciprj.desktop
+	mime_link.path = "$$INSTALLBASE/share/mimelnk/application"
+	
+	contains(INSTALLS, icons) {
+		# scalable icon
+		icons.files = icons/scidavis.svg
+		icons.path = "$$INSTALLBASE/share/icons/hicolor/scalable/apps"
+
+		# hicolor icons for different resolutions
+		resolutions = 16 22 32 48 64 128
+		for(res, resolutions) {
+			eval(icon_hicolor_$${res}.files = icons/hicolor-$${res}/scidavis.png)
+			eval(icon_hicolor_$${res}.path = "$$INSTALLBASE/share/icons/hicolor/$${res}x$${res}/apps")
+			INSTALLS += icon_hicolor_$${res}
+		}
+
+		# locolor icons for different resolutions
+		resolutions = 16 22 32
+		for(res, resolutions) {
+			eval(icon_locolor_$${res}.files = icons/locolor-$${res}/scidavis.png)
+			eval(icon_locolor_$${res}.path = "$$INSTALLBASE/share/icons/locolor/$${res}x$${res}/apps")
+
+			INSTALLS += icon_locolor_$${res}
+		}
+	}
+}
diff --git a/academic/scidavis/fix_wrong_values_on_parameters_errors.patch b/academic/scidavis/fix_wrong_values_on_parameters_errors.patch
new file mode 100644
index 0000000000000..380ad4d6d8843
--- /dev/null
+++ b/academic/scidavis/fix_wrong_values_on_parameters_errors.patch
@@ -0,0 +1,16 @@
+--- Fit.cpp	2016-07-28 22:17:44.000000000 -0300
++++ Fit.cpp.new	2016-11-28 10:46:40.000000000 -0200
+@@ -127,9 +127,10 @@
+ 	gsl_multifit_covar (s->J, 0.0, covar);
+ #else
+         {
+-          gsl_matrix J;
+-          gsl_multifit_fdfsolver_jac(s,&J);
+-          gsl_multifit_covar (&J, 0.0, covar);
++          gsl_matrix *J = gsl_matrix_alloc(d_n, d_p);
++          gsl_multifit_fdfsolver_jac(s,J);
++          gsl_multifit_covar (J, 0.0, covar);
++	  gsl_matrix_free (J);
+         }
+ #endif
+ 	if (d_y_error_source == UnknownErrors) {
diff --git a/academic/scidavis/scidavis.SlackBuild b/academic/scidavis/scidavis.SlackBuild
new file mode 100644
index 0000000000000..ee13ce7f97b7f
--- /dev/null
+++ b/academic/scidavis/scidavis.SlackBuild
@@ -0,0 +1,116 @@
+#!/bin/sh
+
+# Slackware build script for SciDAVis
+# Based on the Slackware 14.1 SlackBuild
+# Written by Fellype do Nascimento <fellype(at)gmail.com>
+
+#
+# Redistribution and use of this script, with or without modification, is
+# permitted provided that the following conditions are met:
+#
+# 1. Redistributions of this script must retain the above copyright
+#    notice, this list of conditions and the following disclaimer.
+#
+#  THIS SOFTWARE IS PROVIDED BY THE AUTHOR "AS IS" AND ANY EXPRESS OR IMPLIED
+#  WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF
+#  MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED.  IN NO
+#  EVENT SHALL THE AUTHOR BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,
+#  SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
+#  PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS;
+#  OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
+#  WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR
+#  OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF
+#  ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
+
+PRGNAM=scidavis
+VERSION=${VERSION:-1.14}
+BUILD=${BUILD:-1}
+TAG=${TAG:-_SBo}
+
+if [ -z "$ARCH" ]; then
+  case "$( uname -m )" in
+    i?86) ARCH=i586 ;;
+    arm*) ARCH=arm ;;
+       *) ARCH=$( uname -m ) ;;
+  esac
+fi
+
+
+CWD=$(pwd)
+TMP=${TMP:-/tmp/SBo}
+PKG=$TMP/package-$PRGNAM
+OUTPUT=${OUTPUT:-/tmp}
+
+if [ "$ARCH" = "i586" ]; then
+  SLKCFLAGS="-O2 -march=i586 -mtune=i686"; SLKLDFLAGS=""; LIBDIRSUFFIX="";
+elif [ "$ARCH" = "i686" ]; then
+  SLKCFLAGS="-O2 -march=i686 -mtune=i686"; SLKLDFLAGS=""; LIBDIRSUFFIX="";
+elif [ "$ARCH" = "x86_64" ]; then
+ SLKCFLAGS="-O2 -fPIC"; SLKLDFLAGS="-L/usr/lib64"; LIBDIRSUFFIX="64"
+fi
+
+
+rm -rf $PKG
+mkdir -p $TMP $PKG $OUTPUT
+cd $TMP
+rm -rf $PRGNAM-$VERSION
+tar -zxvf $CWD/$PRGNAM-$VERSION.tar.gz
+cd $PRGNAM-$VERSION
+chown -R root:root .
+
+# Correction needed in order to find qwtplot3d in its default path
+grep -rl "qwtplot3d/" libscidavis/src/ | xargs sed -i "s:<qwtplot3d/:<:"
+
+# Correction needed in order to re-enable desktop integration
+cat $CWD/desktop_integration.txt >> scidavis/basic.pri
+
+## Applying a patch on libscidavis/src/Fit.cpp in order to have correct values of parameters' errors generated by fit functions
+patch -p1 < $CWD/fix_wrong_values_on_parameters_errors.patch libscidavis/src/Fit.cpp
+
+## Applying a patch in the config.pri file in order to build with the correct path for qwt5
+patch -p1 < $CWD/correction_to_use_qwt5.patch config.pri
+
+## For some unknown reason, to build in Slackware we need to run qmake twice in order to get icons working properly
+## See https://sourceforge.net/p/scidavis/scidavis-bugs/259/
+qmake
+qmake CONFIG+="liborigin python" PRESET=linux_package
+
+# Build and install:
+LDFLAGS="$SLKLDFLAGS" \
+CFLAGS="$SLKCFLAGS" \
+CXXFLAGS="$SLKCFLAGS" \
+make
+make install INSTALL_ROOT=$PKG
+
+## Sometimes 'make install' fails to install the translation files
+mkdir -p $PKG/usr/share/scidavis/translations
+cp scidavis/translations/*.qm $PKG/usr/share/scidavis/translations
+
+mkdir -p $PKG/usr/doc/$PRGNAM-$VERSION
+cp -a README.md LICENSE $PKG/usr/doc/$PRGNAM-$VERSION
+cp -a $PKG/usr/share/doc/scidavis/*.* $PKG/usr/doc/$PRGNAM-$VERSION
+cat $CWD/$PRGNAM.SlackBuild > $PKG/usr/doc/$PRGNAM-$VERSION/$PRGNAM.SlackBuild
+rm -rf $PKG/usr/share/doc
+
+( cd $PKG
+find . | xargs file | grep "executable" | grep ELF | cut -f 1 -d : | xargs strip --strip-unneeded 2> /dev/null || true
+find . | xargs file | grep "shared object" | grep ELF | cut -f 1 -d : | xargs strip --strip-unneeded 2> /dev/null || true
+find . | xargs file | grep "current ar archive" | cut -f 1 -d : | xargs strip -g 2> /dev/null || true
+)
+
+mkdir -p $PKG/install
+cat $CWD/slack-desc > $PKG/install/slack-desc
+cat $CWD/slack-desc > $PKG/usr/doc/$PRGNAM-$VERSION/slack-desc
+
+mkdir -p $PKG/usr/man/man1
+docbook2man man/manpage.sgml -o $PKG/usr/man/man1/
+cp $PKG/usr/man/man1/SciDAVis.1 $PKG/usr/man/man1/scidavis.1
+gzip -9 $PKG/usr/man/man1/*.1
+rm $PKG/usr/man/man1/manpage.*
+
+if [ -e /usr/bin/requiredbuilder ]; then
+  requiredbuilder -v -y -s $CWD $PKG
+fi
+
+cd $PKG
+/sbin/makepkg -l y -c n $OUTPUT/$PRGNAM-$VERSION-$ARCH-$BUILD$TAG.${PKGTYPE:-tgz}
diff --git a/academic/scidavis/scidavis.info b/academic/scidavis/scidavis.info
new file mode 100644
index 0000000000000..853e5488beeeb
--- /dev/null
+++ b/academic/scidavis/scidavis.info
@@ -0,0 +1,10 @@
+PRGNAM="scidavis"
+VERSION="1.14"
+HOMEPAGE="http://scidavis.sourceforge.net/"
+DOWNLOAD="http://downloads.sourceforge.net/project/scidavis/SciDAVis/1.14/scidavis-1.14.tar.gz"
+MD5SUM="6b5fd39c17ed67cd64c77ac214099b2e"
+DOWNLOAD_x86_64=""
+MD5SUM_x86_64=""
+REQUIRES="muParser qwt5 qwtplot3d"
+MAINTAINER="Fellype do Nascimento"
+EMAIL="fellype(at)gmail.com"
diff --git a/academic/scidavis/slack-desc b/academic/scidavis/slack-desc
new file mode 100644
index 0000000000000..8d9b58c6ef541
--- /dev/null
+++ b/academic/scidavis/slack-desc
@@ -0,0 +1,19 @@
+# HOW TO EDIT THIS FILE:
+# The "handy ruler" below makes it easier to edit a package description.
+# Line up the first '|' above the ':' following the base package name, and
+# the '|' on the right side marks the last column you can put a character in.
+# You must make exactly 11 lines for the formatting to be correct.  It's also
+# customary to leave one space after the ':' except on otherwise blank lines.
+
+        |----handy-ruler--------------------------------------------------------|
+scidavis: scidavis (data analysis and visualization)
+scidavis:
+scidavis: SciDAVis is a free interactive application aimed at data analysis and
+scidavis: publication-quality plotting. It combines a shallow learning curve and
+scidavis: an intuitive, easy-to-use graphical user interface with powerful
+scidavis: features such as scriptability and extensibility.
+scidavis:
+scidavis:
+scidavis: For more information visit http://scidavis.sourceforge.net/
+scidavis:
+scidavis: