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| author | Rob van Nues <sborg63@disroot.org> | 2020-10-09 01:58:08 +0100 |
|---|---|---|
| committer | Willy Sudiarto Raharjo <willysr@slackbuilds.org> | 2020-10-10 10:18:46 +0700 |
| commit | 91bffe057f826dcfdba3a3aca0b294a3ebf298e6 (patch) | |
| tree | 4f86c61843593385f2461463373ecc3537aa2fc1 /academic/samtools/README | |
| parent | 2fd6e68c6d80fcdc8e43830ede62a6a2b3342c28 (diff) | |
academic/samtools: Updated for version 1.11.
Signed-off-by: Dave Woodfall <dave@slackbuilds.org>
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
Diffstat (limited to 'academic/samtools/README')
| -rw-r--r-- | academic/samtools/README | 28 |
1 files changed, 14 insertions, 14 deletions
diff --git a/academic/samtools/README b/academic/samtools/README index 857bfbeaa7539..d8e2540720ccd 100644 --- a/academic/samtools/README +++ b/academic/samtools/README @@ -1,16 +1,16 @@ -SAM (Sequence Alignment/Map) format is a generic format for storing large -nucleotide sequence alignments. The original samtools package has been split -into three separate but tightly coordinated projects: htslib (C library for -handling high-throughput sequencing data), samtools (for handling SAM, BAM, -CRAM), and bcftools (for handling VCF and BCF). +SAM (Sequence Alignment/Map) format is a generic format for storing +large nucleotide sequence alignments. The original samtools package has +been split into three separate but tightly coordinated projects: htslib +(C library for handling high-throughput sequencing data), samtools (for +handling SAM, BAM, CRAM), and bcftools (for handling VCF and BCF). -Samtools is now distributed as an individual package. Installation is set up -so that the code uses an external HTSlib (also at SBo). Although deprecated -upstream, in the case that people need parts of samtools-legacy (e.g header -files or libbam) these can be installed from this package by modifying the -samtools.Slackbuild. Note that the sam.h of htslib differs from sam.h coming -with samtools. +Samtools is now distributed as an individual package. Installation is +set up so that the code uses an external HTSlib (also at SBo). Although +deprecated upstream, in the case that people need parts of +samtools-legacy (e.g header files or libbam) these can be installed from +this package by modifying the samtools.Slackbuild. Note that the sam.h +of htslib differs from sam.h coming with samtools. -Prior to the introduction of HTSlib, SAMtools and BCFtools were distributed -in a single samtools-0.1.x package. This old version remains available from -SBo as samtools-legacy. +Prior to the introduction of HTSlib, SAMtools and BCFtools were +distributed in a single samtools-0.1.x package. This old version remains +available from SBo as samtools-legacy. |