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author | Petar Petrov <petar.petrov@student.oulu.fi> | 2013-12-14 08:02:52 +0700 |
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committer | Erik Hanson <erik@slackbuilds.org> | 2013-12-14 10:53:05 -0600 |
commit | 00017f6260e9e0d2951eac42aeea9d8fbb9f1034 (patch) | |
tree | ed8db6c055c2fc57e4f322ececdf77392e77c6d3 /academic/samtools/README | |
parent | 723d17ef4fdabd19a8004eb40ec1864d78082c8c (diff) |
academic/samtools: Added (Sequence Alignment/Map Tools).
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
Diffstat (limited to 'academic/samtools/README')
-rw-r--r-- | academic/samtools/README | 22 |
1 files changed, 22 insertions, 0 deletions
diff --git a/academic/samtools/README b/academic/samtools/README new file mode 100644 index 000000000000..0203586f9426 --- /dev/null +++ b/academic/samtools/README @@ -0,0 +1,22 @@ +SAM (Sequence Alignment/Map) format is a generic format for storing +large nucleotide sequence alignments. SAM aims to be a format that: + +- Is flexible enough to store all the alignment information generated + by various alignment programs +- Is simple enough to be easily generated by alignment programs or + converted from existing alignment formats +- Is compact in file size +- Allows most of operations on the alignment to work on a stream + without loading the whole alignment into memory +- Allows the file to be indexed by genomic position to efficiently + retrieve all reads aligning to a locus. + +SAM Tools provide various utilities for manipulating alignments in the +SAM format, including sorting, merging, indexing and generating +alignments in a per-position format. + +Publication: +Li H.*, Handsaker B.*, Wysoker A., Fennell T., Ruan J., Homer N., +Marth G., Abecasis G., Durbin R. and 1000 Genome Project Data +Processing Subgroup (2009) The Sequence alignment/map (SAM) format and +SAMtools. Bioinformatics, 25, 2078-9. [PMID: 19505943] |