academic/rpy2: Added (R in Python).

Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>

6 files changed, 141 insertions, 0 deletions

diff --git a/academic/rpy2/README b/academic/rpy2/README
new file mode 100644
index 0000000000000..62656e95fb8e8
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+++ b/academic/rpy2/README
@@ -0,0 +1,17 @@
+Python interface to the R language.
+
+rpy2 is running an embedded R, providing access to it 
+from Python using R's own C-API through either:
+
+1) a high-level interface making R functions and objects 
+just like Python functions and providing a seamless 
+conversion to numpy and pandas data structures
+
+2) a low-level interface closer to the C-API
+
+It is also providing features for when working with 
+jupyter notebooks or ipython.
+
+NOTE:
+R needs to be compiled with the shared library flag,
+thus: build R on SBo with R_SHLIB=yes and BLAS_SHLIB=yes
diff --git a/academic/rpy2/Rlibs.conf b/academic/rpy2/Rlibs.conf
new file mode 100644
index 0000000000000..cd1ea265b77e8
--- /dev/null
+++ b/academic/rpy2/Rlibs.conf
@@ -0,0 +1,2 @@
+##placed as rpy2 cannot load R without "export LD_LIBRARY_PATH=/usr/lib64/R/lib/"
+/usr/lib64/R/lib
\ No newline at end of file
diff --git a/academic/rpy2/doinst.sh b/academic/rpy2/doinst.sh
new file mode 100644
index 0000000000000..bf984ccfe441e
--- /dev/null
+++ b/academic/rpy2/doinst.sh
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+#load the path to the R libraries to enable linking
+ldconfig
diff --git a/academic/rpy2/rpy2.SlackBuild b/academic/rpy2/rpy2.SlackBuild
new file mode 100644
index 0000000000000..605121ff72b36
--- /dev/null
+++ b/academic/rpy2/rpy2.SlackBuild
@@ -0,0 +1,91 @@
+#!/bin/sh
+#
+# SlackBuild for rpy2
+#
+# Copyright 2020 Rob van Nues (sborg63@disroot.org)
+#
+# Redistribution and use of this script, with or without modification, is
+# permitted provided that the following conditions are met:
+#
+# 1. Redistributions of this script must retain the above copyright
+#    notice, this list of conditions and the following disclaimer.
+#
+# THIS SOFTWARE IS PROVIDED BY THE AUTHOR ''AS IS'' AND ANY EXPRESS OR IMPLIED
+# WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF
+# MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO
+# EVENT SHALL THE AUTHOR BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,
+# SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
+# PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS;
+# OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
+# WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR
+# OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF
+# ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
+
+PRGNAM=rpy2
+VERSION=${VERSION:-3.2.7}
+BUILD=${BUILD:-1}
+TAG=${TAG:-_SBo}
+
+if [ -z "$ARCH" ]; then
+  case "$( uname -m )" in
+    i?86) ARCH=i586 ;;
+    arm*) ARCH=arm ;;
+       *) ARCH=$( uname -m ) ;;
+  esac
+fi
+
+CWD=$(pwd)
+TMP=${TMP:-/tmp/SBo}
+PKG=$TMP/package-$PRGNAM
+OUTPUT=${OUTPUT:-/tmp}
+
+if [ "$ARCH" = "i586" ]; then
+  SLKCFLAGS="-O2 -march=i586 -mtune=i686"
+  LIBDIRSUFFIX=""
+elif [ "$ARCH" = "i686" ]; then
+  SLKCFLAGS="-O2 -march=i686 -mtune=i686"
+  LIBDIRSUFFIX=""
+elif [ "$ARCH" = "x86_64" ]; then
+  SLKCFLAGS="-O2 -fPIC"
+  LIBDIRSUFFIX="64"
+else
+  SLKCFLAGS="-O2"
+  LIBDIRSUFFIX=""
+fi
+
+set -e
+
+rm -rf $PKG
+mkdir -p $TMP $PKG $OUTPUT
+cd $TMP
+rm -rf $PRGNAM-v$VERSION
+tar xvf $CWD/$PRGNAM-$VERSION.tar.gz
+cd $PRGNAM-$VERSION
+chown -R root:root .
+find -L . \
+ \( -perm 777 -o -perm 775 -o -perm 750 -o -perm 711 -o -perm 555 \
+  -o -perm 511 \) -exec chmod 755 {} \; -o \
+ \( -perm 666 -o -perm 664 -o -perm 640 -o -perm 600 -o -perm 444 \
+  -o -perm 440 -o -perm 400 \) -exec chmod 644 {} \;
+
+## make sure that R has been compiled with
+## --enable-R-shlib
+## --enable-BLAS-shlib
+python3 setup.py build install --root=$PKG
+
+mkdir -p $PKG/usr/doc/$PRGNAM-$VERSION
+cp -a AUTHORS gpl-2.0.txt NEWS README* $PKG/usr/doc/$PRGNAM-$VERSION
+cat $CWD/$PRGNAM.SlackBuild > $PKG/usr/doc/$PRGNAM-$VERSION/$PRGNAM.SlackBuild
+
+## to facilitate dynamic linking with R,
+## libR.so and libRblas.so need to be found
+## https://github.com/rpy2/rpy2/issues/675
+mkdir -p $PKG/etc/ld.so.conf.d/
+cat $CWD/Rlibs.conf > $PKG/etc/ld.so.conf.d/Rlibs.conf
+
+mkdir -p $PKG/install
+cat $CWD/slack-desc > $PKG/install/slack-desc
+cat $CWD/doinst.sh > $PKG/install/doinst.sh
+
+cd $PKG
+/sbin/makepkg -l y -c n $OUTPUT/$PRGNAM-$VERSION-$ARCH-$BUILD$TAG.${PKGTYPE:-tgz}
diff --git a/academic/rpy2/rpy2.info b/academic/rpy2/rpy2.info
new file mode 100644
index 0000000000000..a09d994c5f257
--- /dev/null
+++ b/academic/rpy2/rpy2.info
@@ -0,0 +1,10 @@
+PRGNAM="rpy2"
+VERSION="3.2.7"
+HOMEPAGE="https://rpy2.github.io/"
+DOWNLOAD="https://pypi.python.org/packages/source/r/rpy2/rpy2-3.2.7.tar.gz"
+MD5SUM="eaa65c233eb2d60678dabe2b58894aa4"
+DOWNLOAD_x86_64=""
+MD5SUM_x86_64=""
+REQUIRES="R cffi Jinja2 pytest simplegeneric tzlocal"
+MAINTAINER="Rob van Nues"
+EMAIL="sborg63@disroot.org"
diff --git a/academic/rpy2/slack-desc b/academic/rpy2/slack-desc
new file mode 100644
index 0000000000000..10acc33e06edb
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+++ b/academic/rpy2/slack-desc
@@ -0,0 +1,19 @@
+# HOW TO EDIT THIS FILE:
+# The "handy ruler" below makes it easier to edit a package description.
+# Line up the first '|' above the ':' following the base package name, and
+# the '|' on the right side marks the last column you can put a character in.
+# You must make exactly 11 lines for the formatting to be correct.  It's also
+# customary to leave one space after the ':' except on otherwise blank lines.
+
+    |-----handy-ruler------------------------------------------------------|
+rpy2: rpy2 (R in Python)
+rpy2:
+rpy2: rpy2 is an interface to R running embedded in a Python process.
+rpy2: The project is mature, stable, documented, and widely used
+rpy2: 
+rpy2: It is also providing features for when working 
+rpy2: with jupyter notebooks or ipython.
+rpy2:
+rpy2: home:https://rpy2.github.io/
+rpy2: https://rpy2.github.io/doc/latest/html/index.html
+rpy2:
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