diff options
| author | Rob van Nues <sborg63@disroot.org> | 2020-10-09 02:12:14 +0100 |
|---|---|---|
| committer | Willy Sudiarto Raharjo <willysr@slackbuilds.org> | 2020-10-10 10:18:46 +0700 |
| commit | 0074529fa74b9ea924793a4b17bc3b99103592cb (patch) | |
| tree | efb3246a97bb48fe05d0a3d5dd7913c2189de078 /academic/pysam | |
| parent | 9abb5459113d067467b9479ef516d8f4bb48d40f (diff) | |
academic/pysam: Updated for version 0.16.0.1.
Signed-off-by: Dave Woodfall <dave@slackbuilds.org>
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
Diffstat (limited to 'academic/pysam')
| -rw-r--r-- | academic/pysam/pysam.SlackBuild | 8 | ||||
| -rw-r--r-- | academic/pysam/pysam.info | 2 |
2 files changed, 5 insertions, 5 deletions
diff --git a/academic/pysam/pysam.SlackBuild b/academic/pysam/pysam.SlackBuild index 48a8ef263feef..dcbc06e1a63d5 100644 --- a/academic/pysam/pysam.SlackBuild +++ b/academic/pysam/pysam.SlackBuild @@ -25,7 +25,7 @@ PRGNAM=pysam VERSION=${VERSION:-0.16.0.1} -BUILD=${BUILD:-1} +BUILD=${BUILD:-3} TAG=${TAG:-_SBo} #set which python version to install it for @@ -75,10 +75,10 @@ find -L . \ \( -perm 666 -o -perm 664 -o -perm 640 -o -perm 600 -o -perm 444 \ -o -perm 440 -o -perm 400 \) -exec chmod 644 {} \; -### pysam now linked to htslib-1.10 so this can be done again: +### pysam linked to htslib-1.10; SBo-htslib is at 1.11: ##use system htslib: -export HTSLIB_LIBRARY_DIR=/usr/lib$LIBDIRSUFFIX -export HTSLIB_INCLUDE_DIR=/usr/include +#export HTSLIB_LIBRARY_DIR=/usr/lib$LIBDIRSUFFIX +#export HTSLIB_INCLUDE_DIR=/usr/include #the source does not allow 'read' to 'other', which could cause a problem on reloading a Jupyter-notebook chmod 644 pysam.egg-info/* diff --git a/academic/pysam/pysam.info b/academic/pysam/pysam.info index 19fac12bab46f..724abb43a7709 100644 --- a/academic/pysam/pysam.info +++ b/academic/pysam/pysam.info @@ -5,6 +5,6 @@ DOWNLOAD="https://pypi.python.org/packages/source/p/pysam/pysam-0.16.0.1.tar.gz" MD5SUM="5b4b73431f2511727f4fef43a67b392e" DOWNLOAD_x86_64="" MD5SUM_x86_64="" -REQUIRES="python3-Cython htslib" +REQUIRES="python3-Cython" MAINTAINER="Rob van Nues" EMAIL="sborg63@disroot.org" |