diff options
author | Petar Petrov <slackalaxy@gmail.com> | 2018-07-08 19:40:22 +0100 |
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committer | David Spencer <idlemoor@slackbuilds.org> | 2018-07-08 19:40:22 +0100 |
commit | 5c821121ece759ad907abbdf81c640c805eb197d (patch) | |
tree | 6577c355b892a347eaa136a878844505e37dc256 /academic/perlprimer/README | |
parent | cb07f25ef0cebcbb1587cdbe41c496b2c4f2d4b1 (diff) |
academic/perlprimer: Updated for version 1.2.3_f7d3bd0.
Signed-off-by: David Spencer <idlemoor@slackbuilds.org>
Diffstat (limited to 'academic/perlprimer/README')
-rw-r--r-- | academic/perlprimer/README | 18 |
1 files changed, 9 insertions, 9 deletions
diff --git a/academic/perlprimer/README b/academic/perlprimer/README index bb7ab97f9669f..70a8c1ca8d5ff 100644 --- a/academic/perlprimer/README +++ b/academic/perlprimer/README @@ -1,21 +1,21 @@ -PerlPrimer is a free, open-source GUI application written in Perl -that designs primers for standard PCR, bisulphite PCR, real-time PCR -(QPCR) and sequencing. It aims to automate and simplify the process -of primer design. +PerlPrimer is a free, open-source GUI application written in Perl +that designs primers for standard PCR, bisulphite PCR, real-time PCR +(QPCR) and sequencing. It aims to automate and simplify the process +of primer design. PerlPrimer's current features include the following: - Calculation of possible primer-dimers -- Retrieval of genomic or cDNA sequences from Ensembl (including both +- Retrieval of genomic or cDNA sequences from Ensembl (including both sequences automatically for QPCR) -- Ability to BLAST search primers using the NCBI server or a local +- Ability to BLAST search primers using the NCBI server or a local server -- Results can be saved or optionally exported in a tab-delimited +- Results can be saved or optionally exported in a tab-delimited format that is compatible with most spreadsheet applications. - ORF and CpG island detection algorithms -- Ability to add cloning sequences to primers, automatically adjusted +- Ability to add cloning sequences to primers, automatically adjusted to be in-frame -- QPCR primer design without manual intron-exon boundary entry +- QPCR primer design without manual intron-exon boundary entry An optional run-time dependency is spidey, for Real Time PCR. |