diff options
| author | Petar Petrov <slackalaxy@gmail.com> | 2016-06-05 15:48:31 +0300 |
|---|---|---|
| committer | Willy Sudiarto Raharjo <willysr@slackbuilds.org> | 2016-06-05 22:27:59 +0700 |
| commit | aa95130ed566a71b012a1651e6dab1f368ed840e (patch) | |
| tree | 02c06045b17ebbe6dc842f80dac6631b9abf0c31 /academic/pamlX | |
| parent | e89ebdbb0c18202faea1c5edef3e3edf23d36a8c (diff) | |
academic/pamlX: Updated against paml 4.9a
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
Diffstat (limited to 'academic/pamlX')
| -rw-r--r-- | academic/pamlX/README | 10 | ||||
| -rw-r--r-- | academic/pamlX/pamlX.SlackBuild | 6 |
2 files changed, 12 insertions, 4 deletions
diff --git a/academic/pamlX/README b/academic/pamlX/README index d2ab78a000f8..5d45d2518c5b 100644 --- a/academic/pamlX/README +++ b/academic/pamlX/README @@ -1 +1,9 @@ -The graphical user interface for paml. +PAML: Phylogenetic Analysis by Maximum Likelihood + +PAML is a package of programs for phylogenetic analyses of DNA or +protein sequences using maximum likelihood. PAML is not good for tree +making. It may be used to estimate parameters and test hypotheses to +study the evolutionary process, when you have reconstructed trees +using other programs such as PAUP*, PHYLIP, MOLPHY, PhyML, RaxML, etc. + +This is pamlX: the graphical user interface for PAML. diff --git a/academic/pamlX/pamlX.SlackBuild b/academic/pamlX/pamlX.SlackBuild index acf8840b42c4..cb80675a546f 100644 --- a/academic/pamlX/pamlX.SlackBuild +++ b/academic/pamlX/pamlX.SlackBuild @@ -24,7 +24,7 @@ PRGNAM=pamlX VERSION=${VERSION:-1.3.1} -BUILD=${BUILD:-1} +BUILD=${BUILD:-2} TAG=${TAG:-_SBo} if [ -z "$ARCH" ]; then @@ -74,8 +74,8 @@ find -L . \ # manuals installed by paml. sed -i 's|QApplication::applicationDirPath()|"/usr"|g' mainwindow.cpp sed -i 's|+= "/pamlx.conf"|= "~/.pamlX/pamlx.conf"|g' mainwindow.cpp -sed -i 's|/doc/|/doc/paml-4.8a/|g' mainwindow.cpp -sed -i 's|/doc/|/doc/paml-4.8a/|g' pamlhistorydialog.cpp +sed -i 's|/doc/|/doc/paml-4.9a/|g' mainwindow.cpp +sed -i 's|/doc/|/doc/paml-4.9a/|g' pamlhistorydialog.cpp # If you want the "Help" menu to use something else than Okular for # viewing the PDF documentation, uncomment the appropriate line below |