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authorPetar Petrov <petar.petrov@student.oulu.fi>2014-09-29 13:35:06 +0700
committerWilly Sudiarto Raharjo <willysr@slackbuilds.org>2014-10-03 10:16:50 +0700
commitc8eed62852a3df873fee87de5693eafcaf98d305 (patch)
tree4d2d7a52569868ef72b30cc4797e4a067af3267a /academic/paml
parente13ee46d9ccccd80c3bb6cc9d74952551caa27f9 (diff)
academic/paml: Updated for version 4.8a.
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
Diffstat (limited to 'academic/paml')
-rw-r--r--academic/paml/README1
-rw-r--r--academic/paml/paml.SlackBuild8
-rw-r--r--academic/paml/paml.info6
-rw-r--r--academic/paml/slack-desc2
4 files changed, 9 insertions, 8 deletions
diff --git a/academic/paml/README b/academic/paml/README
index 5703a8d4d07fc..6cabb5135e0a6 100644
--- a/academic/paml/README
+++ b/academic/paml/README
@@ -10,7 +10,6 @@ Notes about running of PAML programs and the package:
- Example datasets are included in /usr/share/paml/examples
- Control files for PAML programs are in /usr/share/paml
-- Dcumentation can be found in /usr/doc/paml-$VERSION
- Additional executables are placed in /usr/libexec/paml
Suggested citation:
diff --git a/academic/paml/paml.SlackBuild b/academic/paml/paml.SlackBuild
index c0c62ef3e253b..5c3bc898477ef 100644
--- a/academic/paml/paml.SlackBuild
+++ b/academic/paml/paml.SlackBuild
@@ -23,7 +23,7 @@
# ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
PRGNAM=paml
-VERSION=${VERSION:-4.8}
+VERSION=${VERSION:-4.8a}
BUILD=${BUILD:-1}
TAG=${TAG:-_SBo}
@@ -35,6 +35,8 @@ if [ -z "$ARCH" ]; then
esac
fi
+MAINVER=4.8
+
CWD=$(pwd)
TMP=${TMP:-/tmp/SBo}
PKG=$TMP/package-$PRGNAM
@@ -61,7 +63,7 @@ mkdir -p $TMP $PKG $OUTPUT
cd $TMP
rm -rf ${PRGNAM}${VERSION}
tar xvf $CWD/${PRGNAM}${VERSION}.tgz
-cd ${PRGNAM}${VERSION}
+cd ${PRGNAM}${MAINVER}
chown -R root:root .
find -L . \
\( -perm 777 -o -perm 775 -o -perm 750 -o -perm 711 -o -perm 555 \
@@ -122,7 +124,7 @@ cd ..
cc -o multiruns $SLKCFLAGS multiruns.c -lm
install -D -m755 multiruns $PKG/usr/libexec/$PRGNAM/multiruns
-cd $TMP/${PRGNAM}${VERSION}
+cd $TMP/${PRGNAM}${MAINVER}
# Include sample system files and example experimental data.
mkdir -p $PKG/usr/share/$PRGNAM/{aa,codon,ctl,dat,nuc,paup,trees}
diff --git a/academic/paml/paml.info b/academic/paml/paml.info
index 1362f9599a7d5..cea138f17eb11 100644
--- a/academic/paml/paml.info
+++ b/academic/paml/paml.info
@@ -1,9 +1,9 @@
PRGNAM="paml"
-VERSION="4.8"
+VERSION="4.8a"
HOMEPAGE="http://abacus.gene.ucl.ac.uk/software/paml.html"
-DOWNLOAD="http://abacus.gene.ucl.ac.uk/software/paml4.8.tgz \
+DOWNLOAD="http://abacus.gene.ucl.ac.uk/software/paml4.8a.tgz \
http://abacus.gene.ucl.ac.uk/software/MCMCtree.Tutorials.pdf"
-MD5SUM="b99f10ba64da7889f35b68a3dfc99daf \
+MD5SUM="1da1f6c3861b45451cf130961d4bd3e3 \
29c851d887eea56b949c01ab42cc48fb"
DOWNLOAD_x86_64=""
MD5SUM_x86_64=""
diff --git a/academic/paml/slack-desc b/academic/paml/slack-desc
index 3d3aeb22d8936..1ec5546349c8e 100644
--- a/academic/paml/slack-desc
+++ b/academic/paml/slack-desc
@@ -16,4 +16,4 @@ paml: reconstructed trees using other programs such as PAUP*, PHYLIP,
paml: MOLPHY, PhyML, RaxML, etc.
paml:
paml: Home: http://abacus.gene.ucl.ac.uk/software/paml.html
-paml: References: /usr/doc/paml-4.8/References
+paml: References: /usr/doc/paml-4.8a/References