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| author | Petar Petrov <petar.petrov@student.oulu.fi> | 2013-12-14 08:46:00 +0700 |
|---|---|---|
| committer | Erik Hanson <erik@slackbuilds.org> | 2013-12-14 10:53:06 -0600 |
| commit | 8c35f38c042e85a39712cd73a895b1f566d1050d (patch) | |
| tree | f235bb47aee8d7c7994613c13b46f9308154937a /academic/paml/README | |
| parent | 4ac706e0939700e07495fa69c66670fed121edc2 (diff) | |
academic/paml: Added (Phylogenetic Analysis by Maximum Likelihood).
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
Diffstat (limited to 'academic/paml/README')
| -rw-r--r-- | academic/paml/README | 18 |
1 files changed, 18 insertions, 0 deletions
diff --git a/academic/paml/README b/academic/paml/README new file mode 100644 index 0000000000000..5703a8d4d07fc --- /dev/null +++ b/academic/paml/README @@ -0,0 +1,18 @@ +PAML: Phylogenetic Analysis by Maximum Likelihood + +PAML is a package of programs for phylogenetic analyses of DNA or +protein sequences using maximum likelihood. PAML is not good for tree +making. It may be used to estimate parameters and test hypotheses to +study the evolutionary process, when you have reconstructed trees +using other programs such as PAUP*, PHYLIP, MOLPHY, PhyML, RaxML, etc. + +Notes about running of PAML programs and the package: + +- Example datasets are included in /usr/share/paml/examples +- Control files for PAML programs are in /usr/share/paml +- Dcumentation can be found in /usr/doc/paml-$VERSION +- Additional executables are placed in /usr/libexec/paml + +Suggested citation: +Yang, Z. 2007. PAML 4: a program package for phylogenetic analysis by +maximum likelihood. Molecular Biology and Evolution 24: 1586-1591 |