academic/meme-suite: Updated for version 5.1.0.

Signed-off-by: Robby Workman <rworkman@slackbuilds.org>

1 files changed, 28 insertions, 29 deletions

diff --git a/academic/meme-suite/meme-suite.SlackBuild b/academic/meme-suite/meme-suite.SlackBuild
index a21bb00ea1931..acc62dc3a5e72 100644
--- a/academic/meme-suite/meme-suite.SlackBuild
+++ b/academic/meme-suite/meme-suite.SlackBuild
@@ -2,7 +2,7 @@
 
 # Slackware build script for meme-suite
 
-# Copyright 2017 Petar Petrov slackalaxy@gmail.com
+# Copyright 2017-2020 Petar Petrov slackalaxy@gmail.com
 # All rights reserved.
 #
 # Redistribution and use of this script, with or without modification, is
@@ -23,11 +23,12 @@
 #  ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
 
 PRGNAM=meme-suite
-SRCNAM=meme
-VERSION=${VERSION:-4.12.0}
+VERSION=${VERSION:-5.1.0}
 BUILD=${BUILD:-1}
 TAG=${TAG:-_SBo}
 
+SRCNAM=meme
+
 if [ -z "$ARCH" ]; then
   case "$( uname -m )" in
     i?86) ARCH=i586 ;;
@@ -60,9 +61,9 @@ set -e
 rm -rf $PKG
 mkdir -p $TMP $PKG $OUTPUT
 cd $TMP
-rm -rf ${SRCNAM}_${VERSION}
-tar xvf $CWD/${SRCNAM}_${VERSION}.tar.gz
-cd ${SRCNAM}_${VERSION}
+rm -rf ${SRCNAM}-${VERSION}
+tar xvf $CWD/${SRCNAM}-${VERSION}.tar.gz
+cd ${SRCNAM}-${VERSION}
 chown -R root:root .
 find -L . \
  \( -perm 777 -o -perm 775 -o -perm 750 -o -perm 711 -o -perm 555 \
@@ -70,51 +71,49 @@ find -L . \
  \( -perm 666 -o -perm 664 -o -perm 640 -o -perm 600 -o -perm 444 \
   -o -perm 440 -o -perm 400 \) -exec chmod 644 {} \;
 
-# Fix a few paths
-sed -i "s:share/doc:doc/$PRGNAM-$VERSION/doc/:g" Makefile.in
-sed -i "s:share/doc:doc/$PRGNAM-$VERSION/doc/:g" doc/Makefile.*
-sed -i "s:share/doc:doc/$PRGNAM-$VERSION/doc/:g" doc/css/Makefile.*
-sed -i "s:share/doc:doc/$PRGNAM-$VERSION/doc/:g" doc/images/Makefile.*
-sed -i "s:share/doc:doc/$PRGNAM-$VERSION/doc/:g" doc/js/Makefile.*
-sed -i "s:share/doc:doc/$PRGNAM-$VERSION/doc/:g" doc/examples/Makefile.*
-sed -i "s:share/doc:doc/$PRGNAM-$VERSION/doc/:g" doc/examples/compute_prior_dist_example_output_files/Makefile.*
-sed -i "s:share/doc:doc/$PRGNAM-$VERSION/doc/:g" doc/examples/sample_opal_scripts/Makefile.*
-sed -i "s:\\$(libdir)/perl:&/vendor_perl:g"      scripts/Makefile.*
-sed -i "s:\\$(libdir)/python:$(libdir)/python2.7/site-packages:g" scripts/Makefile.*
+# Change name from "meme" to "meme-suite"
+sed -i "s:PACKAGE_NAME='meme':PACKAGE_NAME='meme-suite':" configure
+
+# Do not append the package version to folder names
+find . -name "Makefile.*" -exec \
+sed -i 's:${PACKAGE_NAME}-${PACKAGE_VERSION}:${PACKAGE_NAME}:g' {} \;
+
+# Sometimes the brackets are not curly
+find . -name "Makefile.*" -exec \
+sed -i 's:$(PACKAGE_NAME)-${PACKAGE_VERSION}:$(PACKAGE_NAME):g' {} \;
+
+# Documentation should go to docdir not datadir
+sed -i 's:${datadir}/${PACKAGE_NAME}:${docdir}:g' doc/Makefile.*
+
+# Make empty folders for the databases
+mkdir -p $PKG/var/lib/$PRGNAM/{fasta_databases,gomo_databases,motif_databases,tgene_databases}
 
 ./configure \
   --prefix=/usr \
   --libdir=/usr/lib${LIBDIRSUFFIX} \
   --docdir=/usr/doc/$PRGNAM-$VERSION \
   --with-url="http://meme-suite.org" \
-  --datarootdir=/usr/share/$PRGNAM/data \
-  --sysconfdir=/usr/share/$PRGNAM/etc \
+  --datarootdir=/usr/share \
+  --libexecdir=/usr/libexec \
   --localstatedir=/var \
+  --mandir=/usr/man \
   --with-db=/var/lib/$PRGNAM \
-  --with-logs=/var/log/$PRGNAM \
   --with-temp=/tmp
 
-# CFLAGS should be specified here, otherwise they are not accepted
 make CFLAGS="$SLKCFLAGS -std=gnu89"
-
-# The tests are recommended, but take quite some time. Be patient or comment out the line below.
-# Also, some tests fail on a 32bit system, therefore it is listed as unsupported. If you find a
-# fix, let me know.
-make test
 make install DESTDIR=$PKG
 
 find $PKG -print0 | xargs -0 file | grep -e "executable" -e "shared object" | grep ELF \
   | cut -f 1 -d : | xargs strip --strip-unneeded 2> /dev/null || true
 
-# The databases directory should contain folders for motif, gomo and fasta databases
-mkdir -p $PKG/var/lib/$PRGNAM/{motif_databases,gomo_databases,fasta_databases}
-
 mkdir -p $PKG/usr/doc/$PRGNAM-$VERSION
 cp -a \
   AUTHORS COPYING INSTALL README \
   $PKG/usr/doc/$PRGNAM-$VERSION
 cat $CWD/$PRGNAM.SlackBuild > $PKG/usr/doc/$PRGNAM-$VERSION/$PRGNAM.SlackBuild
 cat $CWD/References > $PKG/usr/doc/$PRGNAM-$VERSION/References
+cat $CWD/README.TESTS > $PKG/usr/doc/$PRGNAM-$VERSION/README.TESTS
+cat $CWD/README.DATABASES > $PKG/usr/doc/$PRGNAM-$VERSION/README.DATABASES
 
 mkdir -p $PKG/install
 cat $CWD/slack-desc > $PKG/install/slack-desc