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authorPetar Petrov <slackalaxy@gmail.com>2017-04-19 11:01:35 +0100
committerWilly Sudiarto Raharjo <willysr@slackbuilds.org>2017-04-22 08:10:45 +0700
commit30bc07bbf06b29cc0d5e0fc08928ab4851bdd3d1 (patch)
tree6772be2aeed7dc4cf26c2651cd4db62843b534ee /academic/megacc/README
parent6f98f7666ddc0cd43ac48d3794d6bc820f8d613e (diff)
academic/megacc: Added (Molecular Evolutionary Genetics Analysis).
Signed-off-by: David Spencer <idlemoor@slackbuilds.org>
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+MEGA: Molecular Evolutionary Genetics Analysis
+
+Sophisticated and user-friendly software suite for analyzing DNA and
+protein sequence data from species and populations.
+
+MEGA-CC is the command-line version of MEGA that implements its core
+analysis functions and is useful for iterative and automated execution.
+There are two executables: megacc and megaproto. Start with megaproto
+which is used to create a MEGA Analysis Options (.mao) file that
+specifies the analysis to run as well as relevant options. Then you call
+megacc from a command shell and pass the .mao filename and input data
+filenames as parameters. For example:
+
+megacc -a myMaoFile.mao -d mySequenceAlignment.fas -o myOutput
+
+To get started, checkout MEGA7-CC-User-Manual.pdf, found in the
+documentation folder of the installed package.
+
+This SlackBuild just repackages the binaries provided from upstream.
+There are no 32bit executables.
+
+
+NOTE! IMPORTANT!
+
+MEGA-CC is not free software. Your use of MEGA-CC is subject to the
+licence agreement at:
+
+ http://www.megasoftware.net/show_eua
+
+SlackBuilds.org thanks Prof. Kumar for permission to use the direct
+download URL.
+
+
+Citing:
+
+MEGA7: Molecular Evolutionary Genetics Analysis version 7.0 for bigger
+datasets (Kumar, Stecher, and Tamura 2015).