academic/jellyfish_k-mer: Added (k-mers counting tools).

Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>

1 files changed, 12 insertions, 0 deletions

diff --git a/academic/jellyfish_k-mer/README b/academic/jellyfish_k-mer/README
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+Jellyfish is a tool for fast, memory-efficient counting of k-mers in
+DNA. A k-mer is a substring of length k, and counting the occurrences of
+all such substrings is a central step in many analyses of DNA sequence.
+Jellyfish can count k-mers quickly by using an efficient encoding of a
+hash table and by exploiting the "compare-and-swap" CPU instruction to
+increase parallelism.
+
+Jellyfish is a command-line program that reads FASTA and multi-FASTA
+files containing DNA sequences. It outputs its k-mer counts in an binary
+format, which can be translated into a human-readable text format using
+the "jellyfish dump" command. See the documentation below for more
+details.