diff options
author | Petar Petrov <slackalaxy@gmail.com> | 2018-12-24 19:36:39 +0700 |
---|---|---|
committer | Willy Sudiarto Raharjo <willysr@slackbuilds.org> | 2018-12-24 22:16:55 +0700 |
commit | 28c1302520933032d26145985accfc1cdf1d8954 (patch) | |
tree | 5bfded4c7c46fe1f6fb3d1f7ada7866de3f6c383 /academic/fiji/README | |
parent | 8f5039d047156b07ce6604fc12f0c99c02d94b7c (diff) |
academic/fiji: Added (ImageJ Distribution).
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
Diffstat (limited to 'academic/fiji/README')
-rw-r--r-- | academic/fiji/README | 43 |
1 files changed, 43 insertions, 0 deletions
diff --git a/academic/fiji/README b/academic/fiji/README new file mode 100644 index 0000000000000..525d5bb3de5d9 --- /dev/null +++ b/academic/fiji/README @@ -0,0 +1,43 @@ +Fiji: Fiji is just ImageJ + +Fiji is an image processing package, a "batteries-included" +distribution of ImageJ, bundling a lot of plugins which facilitate +scientific image analysis. + +ImageJ is a Java image processing program inspired by NIH Image for +the Macintosh. It can display, edit, analyze, process, save and print +8-bit, 16-bit and 32-bit images. It can read many image formats +including TIFF, GIF, JPEG, BMP, DICOM, FITS and "raw". It supports +"stacks", a series of images that share a single window. It is multi- +threaded, so time-consuming operations such as image file reading can +be performed in parallel with other operations. + +ImageJ can calculate area and pixel value statistics of user-defined +selections. It can measure distances and angles. It can create density +histograms and line profile plots. It supports standard image +processing functions such as contrast manipulation, sharpening, +smoothing, edge detection and median filtering. + +ImageJ does geometric transformations such as scaling, rotation and +flips. Image can be zoomed up to 32:1 and down to 1:32. All analysis +and processing functions are available at any magnification factor. +The program supports any number of windows (images) simultaneously, +limited only by available memory. + +Spatial calibration is available to provide real world dimensional +measurements in units such as millimeters. Density or gray scale +calibration is also available. + +Fiji is Just ImageJ, with extras. It is a distribution of ImageJ with +many plugins useful for scientific image analysis in fields such as +life sciences. It is actively maintained, with updates released often. + +NOTE! +The download link points to an unversioned archive. This means that +he MD5SUM will change when the tarball is updated from upstream. When +this happens, please notify the maintainer. + +Citing +Schindelin, J.; Arganda-Carreras, I. & Frise, E. et al. (2012) +"Fiji: an open-source platform for biological-image analysis" +Nature methods 9(7): 676-682, PMID 22743772, doi:10.1038/nmeth.2019 |