academic/cholmod: Updated for version 3.0.11.

Signed-off-by: Kyle Guinn <elyk03@gmail.com>

2 files changed, 1644 insertions, 0 deletions

diff --git a/academic/cholmod/patches/atlas-lib-rename.diff b/academic/cholmod/patches/atlas-lib-rename.diff
new file mode 100644
index 000000000000..4801036f4673
--- /dev/null
+++ b/academic/cholmod/patches/atlas-lib-rename.diff
@@ -0,0 +1,21 @@
+diff --git a/m4/ax_blas.m4 b/m4/ax_blas.m4
+--- a/m4/ax_blas.m4
++++ b/m4/ax_blas.m4
+@@ -116,13 +116,10 @@
+ 
+ # BLAS in ATLAS library? (http://math-atlas.sourceforge.net/)
+ if test $ax_blas_ok = no; then
+-	AC_CHECK_LIB(atlas, ATL_xerbla,
+-		[AC_CHECK_LIB(f77blas, $sgemm,
+-		[AC_CHECK_LIB(cblas, cblas_dgemm,
+-			[ax_blas_ok=yes
+-			 BLAS_LIBS="-lcblas -lf77blas -latlas"],
+-			[], [-lf77blas -latlas])],
+-			[], [-latlas])])
++	AC_CHECK_LIB(tatlas, $sgemm,
++		[ax_blas_ok=yes; BLAS_LIBS="-ltatlas"],
++		[AC_CHECK_LIB(satlas, $sgemm,
++			[ax_blas_ok=yes; BLAS_LIBS="-lsatlas"])])
+ fi
+ 
+ # BLAS in PhiPACK libraries? (requires generic BLAS lib, too)
diff --git a/academic/cholmod/patches/autotoolize.diff b/academic/cholmod/patches/autotoolize.diff
new file mode 100644
index 000000000000..4b2828cd27e1
--- /dev/null
+++ b/academic/cholmod/patches/autotoolize.diff
@@ -0,0 +1,1623 @@
+diff --git a/Check/Makefile.am b/Check/Makefile.am
+new file mode 100644
+--- /dev/null
++++ b/Check/Makefile.am
+@@ -0,0 +1,25 @@
++AM_CPPFLAGS = -I$(top_srcdir)/Include $(SUITESPARSECONFIG_CFLAGS)
++
++EXTRA_DIST = \
++	lesser.txt
++
++CHECKSRC = \
++	cholmod_check.c \
++	cholmod_read.c \
++	cholmod_write.c
++
++noinst_LTLIBRARIES = \
++	libchecki.la \
++	libcheckl.la \
++	libcheck.la
++
++libchecki_la_SOURCES = $(CHECKSRC)
++libchecki_la_LIBADD = $(SUITESPARSECONFIG_LIBS)
++libchecki_la_CPPFLAGS = $(AM_CPPFLAGS)
++
++libcheckl_la_SOURCES = $(CHECKSRC)
++libcheckl_la_LIBADD = $(SUITESPARSECONFIG_LIBS)
++libcheckl_la_CPPFLAGS = $(AM_CPPFLAGS) -DDLONG
++
++libcheck_la_SOURCES =
++libcheck_la_LIBADD = libchecki.la libcheckl.la
+diff --git a/Cholesky/Makefile.am b/Cholesky/Makefile.am
+new file mode 100644
+--- /dev/null
++++ b/Cholesky/Makefile.am
+@@ -0,0 +1,40 @@
++AM_CPPFLAGS = -I$(top_srcdir)/Include $(COLAMD_CFLAGS) $(AMD_CFLAGS) $(SUITESPARSECONFIG_CFLAGS)
++
++EXTRA_DIST = \
++	lesser.txt
++
++CHOLESKYSRC = \
++	cholmod_amd.c \
++	cholmod_analyze.c \
++	cholmod_colamd.c \
++	cholmod_etree.c \
++	cholmod_factorize.c \
++	cholmod_postorder.c \
++	cholmod_rcond.c \
++	cholmod_resymbol.c \
++	cholmod_rowcolcounts.c \
++	cholmod_rowfac.c \
++	cholmod_solve.c \
++	cholmod_spsolve.c
++
++noinst_HEADERS = \
++	t_cholmod_lsolve.c \
++	t_cholmod_ltsolve.c \
++	t_cholmod_rowfac.c \
++	t_cholmod_solve.c
++
++noinst_LTLIBRARIES = \
++	libcholeskyi.la \
++	libcholeskyl.la \
++	libcholesky.la
++
++libcholeskyi_la_SOURCES = $(CHOLESKYSRC)
++libcholeskyi_la_LIBADD = $(COLAMD_LIBS) $(AMD_LIBS) $(SUITESPARSECONFIG_LIBS) -lm
++libcholeskyi_la_CPPFLAGS = $(AM_CPPFLAGS)
++
++libcholeskyl_la_SOURCES = $(CHOLESKYSRC)
++libcholeskyl_la_LIBADD = $(COLAMD_LIBS) $(AMD_LIBS) $(SUITESPARSECONFIG_LIBS) -lm
++libcholeskyl_la_CPPFLAGS = $(AM_CPPFLAGS) -DDLONG
++
++libcholesky_la_SOURCES =
++libcholesky_la_LIBADD = libcholeskyi.la libcholeskyl.la
+diff --git a/Core/Makefile.am b/Core/Makefile.am
+new file mode 100644
+--- /dev/null
++++ b/Core/Makefile.am
+@@ -0,0 +1,43 @@
++AM_CPPFLAGS = -I$(top_srcdir)/Include $(SUITESPARSECONFIG_CFLAGS)
++
++EXTRA_DIST = \
++	lesser.txt
++
++CORESRC = \
++	cholmod_aat.c \
++	cholmod_add.c \
++	cholmod_band.c \
++	cholmod_change_factor.c \
++	cholmod_common.c \
++	cholmod_complex.c \
++	cholmod_copy.c \
++	cholmod_dense.c \
++	cholmod_error.c \
++	cholmod_factor.c \
++	cholmod_memory.c \
++	cholmod_sparse.c \
++	cholmod_transpose.c \
++	cholmod_triplet.c \
++	cholmod_version.c
++
++noinst_HEADERS = \
++	t_cholmod_change_factor.c \
++	t_cholmod_dense.c \
++	t_cholmod_transpose.c \
++	t_cholmod_triplet.c
++
++noinst_LTLIBRARIES = \
++	libcorei.la \
++	libcorel.la \
++	libcore.la
++
++libcorei_la_SOURCES = $(CORESRC)
++libcorei_la_LIBADD = $(SUITESPARSECONFIG_LIBS) -lm
++libcorei_la_CPPFLAGS = $(AM_CPPFLAGS)
++
++libcorel_la_SOURCES = $(CORESRC)
++libcorel_la_LIBADD = $(SUITESPARSECONFIG_LIBS) -lm
++libcorel_la_CPPFLAGS = $(AM_CPPFLAGS) -DDLONG
++
++libcore_la_SOURCES =
++libcore_la_LIBADD = libcorei.la libcorel.la
+diff --git a/Demo/Makefile.am b/Demo/Makefile.am
+new file mode 100644
+--- /dev/null
++++ b/Demo/Makefile.am
+@@ -0,0 +1,60 @@
++AM_CPPFLAGS = -I$(top_srcdir)/Include $(SUITESPARSECONFIG_CFLAGS)
++
++EXTRA_DIST = \
++	README.txt \
++	gpl.txt
++
++dist_noinst_HEADERS = \
++	cholmod_demo.h
++
++dist_noinst_DATA = \
++	Matrix/bcsstk01.tri \
++	Matrix/lp_afiro.tri \
++	Matrix/can___24.mtx \
++	Matrix/c.tri
++
++noinst_PROGRAMS = \
++	reade \
++	readhb \
++	readhb2
++
++reade_SOURCES = reade.f
++readhb_SOURCES = readhb.f
++readhb2_SOURCES = readhb2.f
++
++if MOD_CHOLESKY
++if MOD_CHECK
++if MOD_MATRIXOPS
++
++check_PROGRAMS = \
++	cholmod_demo \
++	cholmod_l_demo \
++	cholmod_simple
++
++cholmod_demo_SOURCES = cholmod_demo.c
++cholmod_demo_LDADD = $(top_builddir)/libcholmod.la $(SUITESPARSECONFIG_LIBS)
++
++cholmod_l_demo_SOURCES = cholmod_l_demo.c
++cholmod_l_demo_LDADD = $(top_builddir)/libcholmod.la $(SUITESPARSECONFIG_LIBS)
++
++cholmod_simple_SOURCES = cholmod_simple.c
++cholmod_simple_LDADD = $(top_builddir)/libcholmod.la
++
++check-local: $(check_PROGRAMS) $(dist_noinst_DATA)
++	./cholmod_demo < $(srcdir)/Matrix/bcsstk01.tri
++	./cholmod_l_demo < $(srcdir)/Matrix/bcsstk01.tri
++	./cholmod_demo < $(srcdir)/Matrix/lp_afiro.tri
++	./cholmod_l_demo < $(srcdir)/Matrix/lp_afiro.tri
++	./cholmod_demo < $(srcdir)/Matrix/can___24.mtx
++	./cholmod_l_demo < $(srcdir)/Matrix/can___24.mtx
++	./cholmod_demo < $(srcdir)/Matrix/c.tri
++	./cholmod_l_demo < $(srcdir)/Matrix/c.tri
++	./cholmod_simple < $(srcdir)/Matrix/c.tri
++	./cholmod_simple < $(srcdir)/Matrix/can___24.mtx
++	./cholmod_simple < $(srcdir)/Matrix/bcsstk01.tri
++
++endif
++endif
++endif
++
++CLEANFILES = timelog.m
+diff --git a/Doc/Makefile.am b/Doc/Makefile.am
+new file mode 100644
+--- /dev/null
++++ b/Doc/Makefile.am
+@@ -0,0 +1,442 @@
++EXTRA_DIST = \
++	ChangeLog \
++	License.txt
++
++dist_noinst_DATA = \
++	UserGuide.bib \
++	CHOLMOD_UserGuide.tex \
++	header.tex \
++	footer.tex \
++	mheader.tex \
++	mfooter.tex \
++	mfile.awk \
++	rule.awk
++
++dist_pdf_DATA = \
++	CHOLMOD_UserGuide.pdf
++
++dist_noinst_SCRIPTS = \
++	getmproto \
++	getproto
++
++# ./getmproto file.m > _file_m.tex
++define getmproto =
++( \
++cat $(srcdir)/mheader.tex; \
++expand -8 $< | awk -f $(srcdir)/mfile.awk; \
++cat $(srcdir)/mfooter.tex; \
++) > $@
++endef
++
++# ./getproto 'proto' header.h > _file.tex
++define getproto =
++( \
++echo -n $(PATTERN); \
++cat $(srcdir)/rule.awk; \
++) > $(basename $@).awk
++( \
++cat $(srcdir)/header.tex; \
++expand -8 $< | awk -f $(basename $@).awk; \
++cat $(srcdir)/footer.tex; \
++) > $@
++$(RM) $(basename $@).awk
++endef
++
++PROTO_M = \
++	_analyze_m.tex \
++	_bisect_m.tex \
++	_chol2_m.tex \
++	_cholmod2_m.tex \
++	_cholmod_demo_m.tex \
++	_cholmod_make_m.tex \
++	_etree2_m.tex \
++	_graph_demo_m.tex \
++	_lchol_m.tex \
++	_ldl_normest_m.tex \
++	_ldlchol_m.tex \
++	_ldlsolve_m.tex \
++	_ldlsplit_m.tex \
++	_ldlupdate_m.tex \
++	_ldlrowmod_m.tex \
++	_metis_m.tex \
++	_mread_m.tex \
++	_mwrite_m.tex \
++	_nesdis_m.tex \
++	_resymbol_m.tex \
++	_sdmult_m.tex \
++	_sparse2_m.tex \
++	_spsym_m.tex \
++	_symbfact2_m.tex
++
++$(PROTO_M): mheader.tex mfile.awk mfooter.tex
++_%_m.tex: $(top_srcdir)/MATLAB/%.m
++	$(getmproto)
++
++PROTO_SIMPLE = \
++	_simple.tex
++
++_simple.tex: PATTERN = '/include/, /^}/'
++
++$(PROTO_SIMPLE): $(top_srcdir)/Demo/cholmod_simple.c header.tex rule.awk footer.tex
++	$(getproto)
++
++PROTO_CORE = \
++	_common.tex \
++	_start.tex \
++	_finish.tex \
++	_defaults.tex \
++	_maxrank.tex \
++	_allocate_work.tex \
++	_free_work.tex \
++	_clear_flag.tex \
++	_error.tex \
++	_dbound.tex \
++	_hypot.tex \
++	_divcomplex.tex \
++	_sparse.tex \
++	_allocate_sparse.tex \
++	_free_sparse.tex \
++	_reallocate_sparse.tex \
++	_nnz.tex \
++	_speye.tex \
++	_spzeros.tex \
++	_transpose.tex \
++	_transpose_unsym.tex \
++	_transpose_sym.tex \
++	_ptranspose.tex \
++	_sort.tex \
++	_band.tex \
++	_band_inplace.tex \
++	_aat.tex \
++	_copy_sparse.tex \
++	_copy.tex \
++	_add.tex \
++	_sparse_xtype.tex \
++	_factor.tex \
++	_allocate_factor.tex \
++	_free_factor.tex \
++	_reallocate_factor.tex \
++	_change_factor.tex \
++	_pack_factor.tex \
++	_reallocate_column.tex \
++	_factor_to_sparse.tex \
++	_copy_factor.tex \
++	_factor_xtype.tex \
++	_dense.tex \
++	_allocate_dense.tex \
++	_ensure_dense.tex \
++	_zeros.tex \
++	_ones.tex \
++	_eye.tex \
++	_free_dense.tex \
++	_sparse_to_dense.tex \
++	_dense_to_sparse.tex \
++	_copy_dense.tex \
++	_copy_dense2.tex \
++	_dense_xtype.tex \
++	_triplet.tex \
++	_allocate_triplet.tex \
++	_free_triplet.tex \
++	_reallocate_triplet.tex \
++	_sparse_to_triplet.tex \
++	_triplet_to_sparse.tex \
++	_copy_triplet.tex \
++	_triplet_xtype.tex \
++	_malloc.tex \
++	_calloc.tex \
++	_free.tex \
++	_realloc.tex \
++	_realloc_multiple.tex \
++	_version.tex \
++	_defn.tex
++
++_common.tex: PATTERN = '/typedef struct cholmod_common/, /^}/'
++_start.tex: PATTERN = '/int cholmod_start/, /\*\) ;/'
++_finish.tex: PATTERN = '/int cholmod_finish/, /\*\) ;/'
++_defaults.tex: PATTERN = '/int cholmod_defaults/, /\*\) ;/'
++_maxrank.tex: PATTERN = '/size_t cholmod_maxrank/, /\*\) ;/'
++_allocate_work.tex: PATTERN = '/int cholmod_allocate_work/, /\*\) ;/'
++_free_work.tex: PATTERN = '/int cholmod_free_work/, /\*\) ;/'
++_clear_flag.tex: PATTERN = '/long cholmod_clear_flag/, /\*\) ;/'
++_error.tex: PATTERN = '/int cholmod_error/, /\*\) ;/'
++_dbound.tex: PATTERN = '/double cholmod_dbound/, /\*\) ;/'
++_hypot.tex: PATTERN = '/double cholmod_hypot/, /double\) ;/'
++_divcomplex.tex: PATTERN = '/int cholmod_divcomplex/, /\*\) ;/'
++_sparse.tex: PATTERN = '/typedef struct cholmod_sparse/, /^}/'
++_allocate_sparse.tex: PATTERN = '/cholmod_sparse \*cholmod_allocate_sparse/, /\*\) ;/'
++_free_sparse.tex: PATTERN = '/int cholmod_free_sparse/, /\*\) ;/'
++_reallocate_sparse.tex: PATTERN = '/int cholmod_reallocate_sparse/, /\*\) ;/'
++_nnz.tex: PATTERN = '/long cholmod_nnz/, /\*\) ;/'
++_speye.tex: PATTERN = '/cholmod_sparse \*cholmod_speye/, /\*\) ;/'
++_spzeros.tex: PATTERN = '/cholmod_sparse \*cholmod_spzeros/, /\*\) ;/'
++_transpose.tex: PATTERN = '/cholmod_sparse \*cholmod_transpose/, /\*\) ;/'
++_transpose_unsym.tex: PATTERN = '/int cholmod_transpose_unsym/, /\*\) ;/'
++_transpose_sym.tex: PATTERN = '/int cholmod_transpose_sym/, /\*\) ;/'
++_ptranspose.tex: PATTERN = '/cholmod_sparse \*cholmod_ptranspose/, /\*\) ;/'
++_sort.tex: PATTERN = '/int cholmod_sort/, /\*\) ;/'
++_band.tex: PATTERN = '/cholmod_sparse \*cholmod_band/, /\*\) ;/'
++_band_inplace.tex: PATTERN = '/int cholmod_band_inplace/, /\*\) ;/'
++_aat.tex: PATTERN = '/cholmod_sparse \*cholmod_aat/, /\*\) ;/'
++_copy_sparse.tex: PATTERN = '/cholmod_sparse \*cholmod_copy_sparse/, /\*\) ;/'
++_copy.tex: PATTERN = '/cholmod_sparse \*cholmod_copy /, /\*\) ;/'
++_add.tex: PATTERN = '/cholmod_sparse \*cholmod_add/, /\*\) ;/'
++_sparse_xtype.tex: PATTERN = '/int cholmod_sparse_xtype/, /\*\) ;/'
++_factor.tex: PATTERN = '/typedef struct cholmod_factor/, /^}/'
++_allocate_factor.tex: PATTERN = '/cholmod_factor \*cholmod_allocate_factor/, /\*\) ;/'
++_free_factor.tex: PATTERN = '/int cholmod_free_factor/, /\*\) ;/'
++_reallocate_factor.tex: PATTERN = '/int cholmod_reallocate_factor/, /\*\) ;/'
++_change_factor.tex: PATTERN = '/int cholmod_change_factor/, /\*\) ;/'
++_pack_factor.tex: PATTERN = '/int cholmod_pack_factor/, /\*\) ;/'
++_reallocate_column.tex: PATTERN = '/int cholmod_reallocate_column/, /\*\) ;/'
++_factor_to_sparse.tex: PATTERN = '/cholmod_sparse \*cholmod_factor_to_sparse/, /\*\) ;/'
++_copy_factor.tex: PATTERN = '/cholmod_factor \*cholmod_copy_factor/, /\*\) ;/'
++_factor_xtype.tex: PATTERN = '/int cholmod_factor_xtype/, /\*\) ;/'
++_dense.tex: PATTERN = '/typedef struct cholmod_dense/, /^}/'
++_allocate_dense.tex: PATTERN = '/cholmod_dense \*cholmod_allocate_dense/, /\*\) ;/'
++_ensure_dense.tex: PATTERN = '/cholmod_dense \*cholmod_ensure_dense/, /\*\) ;/'
++_zeros.tex: PATTERN = '/cholmod_dense \*cholmod_zeros/, /\*\) ;/'
++_ones.tex: PATTERN = '/cholmod_dense \*cholmod_ones/, /\*\) ;/'
++_eye.tex: PATTERN = '/cholmod_dense \*cholmod_eye/, /\*\) ;/'
++_free_dense.tex: PATTERN = '/int cholmod_free_dense/, /\*\) ;/'
++_sparse_to_dense.tex: PATTERN = '/cholmod_dense \*cholmod_sparse_to_dense/, /\*\) ;/'
++_dense_to_sparse.tex: PATTERN = '/cholmod_sparse \*cholmod_dense_to_sparse/, /\*\) ;/'
++_copy_dense.tex: PATTERN = '/cholmod_dense \*cholmod_copy_dense/, /\*\) ;/'
++_copy_dense2.tex: PATTERN = '/int cholmod_copy_dense2/, /\*\) ;/'
++_dense_xtype.tex: PATTERN = '/int cholmod_dense_xtype/, /\*\) ;/'
++_triplet.tex: PATTERN = '/typedef struct cholmod_triplet/, /^}/'
++_allocate_triplet.tex: PATTERN = '/cholmod_triplet \*cholmod_allocate_triplet/, /\*\) ;/'
++_free_triplet.tex: PATTERN = '/int cholmod_free_triplet/, /\*\) ;/'
++_reallocate_triplet.tex: PATTERN = '/int cholmod_reallocate_triplet/, /\*\) ;/'
++_sparse_to_triplet.tex: PATTERN = '/cholmod_triplet \*cholmod_sparse_to_triplet/, /\*\) ;/'
++_triplet_to_sparse.tex: PATTERN = '/cholmod_sparse \*cholmod_triplet_to_sparse/, /\*\) ;/'
++_copy_triplet.tex: PATTERN = '/cholmod_triplet \*cholmod_copy_triplet/, /\*\) ;/'
++_triplet_xtype.tex: PATTERN = '/int cholmod_triplet_xtype/, /\*\) ;/'
++_malloc.tex: PATTERN = '/void \*cholmod_malloc/, /\*\) ;/'
++_calloc.tex: PATTERN = '/void \*cholmod_calloc/, /\*\) ;/'
++_free.tex: PATTERN = '/void \*cholmod_free/, /\*\) ;/'
++_realloc.tex: PATTERN = '/void \*cholmod_realloc/, /\*\) ;/'
++_realloc_multiple.tex: PATTERN = '/int cholmod_realloc_multiple/, /\*\) ;/'
++_version.tex: PATTERN = '/int cholmod_version/, /l_version/'
++_defn.tex: PATTERN = '/itype defines the/, /define CHOLMOD_SUPERNODAL/'
++
++$(PROTO_CORE): $(top_srcdir)/Include/cholmod_core.h header.tex rule.awk footer.tex
++	$(getproto)
++
++PROTO_CHECK = \
++	_check_common.tex \
++	_print_common.tex \
++	_check_sparse.tex \
++	_print_sparse.tex \
++	_check_dense.tex \
++	_print_dense.tex \
++	_check_factor.tex \
++	_print_factor.tex \
++	_check_triplet.tex \
++	_print_triplet.tex \
++	_check_subset.tex \
++	_print_subset.tex \
++	_check_perm.tex \
++	_print_perm.tex \
++	_check_parent.tex \
++	_print_parent.tex \
++	_read_triplet.tex \
++	_read_sparse.tex \
++	_read_dense.tex \
++	_read_matrix.tex \
++	_write_sparse.tex \
++	_write_dense.tex
++
++_check_common.tex: PATTERN = '/int cholmod_check_common/, /\*\) ;/'
++_print_common.tex: PATTERN = '/int cholmod_print_common/, /\*\) ;/'
++_check_sparse.tex: PATTERN = '/int cholmod_check_sparse/, /\*\) ;/'
++_print_sparse.tex: PATTERN = '/int cholmod_print_sparse/, /\*\) ;/'
++_check_dense.tex: PATTERN = '/int cholmod_check_dense/, /\*\) ;/'
++_print_dense.tex: PATTERN = '/int cholmod_print_dense/, /\*\) ;/'
++_check_factor.tex: PATTERN = '/int cholmod_check_factor/, /\*\) ;/'
++_print_factor.tex: PATTERN = '/int cholmod_print_factor/, /\*\) ;/'
++_check_triplet.tex: PATTERN = '/int cholmod_check_triplet/, /\*\) ;/'
++_print_triplet.tex: PATTERN = '/int cholmod_print_triplet/, /\*\) ;/'
++_check_subset.tex: PATTERN = '/int cholmod_check_subset/, /\*\) ;/'
++_print_subset.tex: PATTERN = '/int cholmod_print_subset/, /\*\) ;/'
++_check_perm.tex: PATTERN = '/int cholmod_check_perm/, /\*\) ;/'
++_print_perm.tex: PATTERN = '/int cholmod_print_perm/, /\*\) ;/'
++_check_parent.tex: PATTERN = '/int cholmod_check_parent/, /\*\) ;/'
++_print_parent.tex: PATTERN = '/int cholmod_print_parent/, /\*\) ;/'
++_read_triplet.tex: PATTERN = '/cholmod_triplet \*cholmod_read_triplet/, /\*\) ;/'
++_read_sparse.tex: PATTERN = '/cholmod_sparse \*cholmod_read_sparse/, /\*\) ;/'
++_read_dense.tex: PATTERN = '/cholmod_dense \*cholmod_read_dense/, /\*\) ;/'
++_read_matrix.tex: PATTERN = '/void \*cholmod_read_matrix/, /\*\) ;/'
++_write_sparse.tex: PATTERN = '/int cholmod_write_sparse/, /\*\) ;/'
++_write_dense.tex: PATTERN = '/int cholmod_write_dense/, /\*\) ;/'
++
++$(PROTO_CHECK): $(top_srcdir)/Include/cholmod_check.h header.tex rule.awk footer.tex
++	$(getproto)
++
++PROTO_CHOLESKY = \
++	_analyze.tex \
++	_analyze_p.tex \
++	_factorize.tex \
++	_factorize_p.tex \
++	_solve.tex \
++	_solve2.tex \
++	_spsolve.tex \
++	_etree.tex \
++	_rowcolcounts.tex \
++	_analyze_ordering.tex \
++	_amd.tex \
++	_colamd.tex \
++	_rowfac.tex \
++	_rowfac_mask.tex \
++	_row_subtree.tex \
++	_row_lsubtree.tex \
++	_lsolve_pattern.tex \
++	_resymbol.tex \
++	_resymbol_noperm.tex \
++	_rcond.tex \
++	_postorder.tex
++
++_analyze.tex: PATTERN = '/cholmod_factor \*cholmod_analyze /, /\*\) ;/'
++_analyze_p.tex: PATTERN = '/cholmod_factor \*cholmod_analyze_p/, /\*\) ;/'
++_factorize.tex: PATTERN = '/int cholmod_factorize /, /\*\) ;/'
++_factorize_p.tex: PATTERN = '/int cholmod_factorize_p/, /\*\) ;/'
++_solve.tex: PATTERN = '/cholmod_dense \*cholmod_solve/, /\*\) ;/'
++_solve2.tex: PATTERN = '/int cholmod_solve2/, /\*\) ;/'
++_spsolve.tex: PATTERN = '/cholmod_sparse \*cholmod_spsolve/, /\*\) ;/'
++_etree.tex: PATTERN = '/int cholmod_etree/, /\*\) ;/'
++_rowcolcounts.tex: PATTERN = '/int cholmod_rowcolcounts/, /\*\) ;/'
++_analyze_ordering.tex: PATTERN = '/int cholmod_analyze_ordering/, /\*\) ;/'
++_amd.tex: PATTERN = '/int cholmod_amd/, /\*\) ;/'
++_colamd.tex: PATTERN = '/int cholmod_colamd/, /\*\) ;/'
++_rowfac.tex: PATTERN = '/int cholmod_rowfac/, /\*\) ;/'
++_rowfac_mask.tex: PATTERN = '/int cholmod_rowfac_mask/, /\*\) ;/'
++_row_subtree.tex: PATTERN = '/int cholmod_row_subtree/, /\*\) ;/'
++_row_lsubtree.tex: PATTERN = '/int cholmod_row_lsubtree/, /\*\) ;/'
++_lsolve_pattern.tex: PATTERN = '/int cholmod_lsolve_pattern/, /\*\) ;/'
++_resymbol.tex: PATTERN = '/int cholmod_resymbol /, /\*\) ;/'
++_resymbol_noperm.tex: PATTERN = '/int cholmod_resymbol_noperm/, /\*\) ;/'
++_rcond.tex: PATTERN = '/double cholmod_rcond/, /\*\) ;/'
++_postorder.tex: PATTERN = '/long cholmod_postorder/, /\*\) ;/'
++
++$(PROTO_CHOLESKY): $(top_srcdir)/Include/cholmod_cholesky.h header.tex rule.awk footer.tex
++	$(getproto)
++
++PROTO_MODIFY = \
++	_updown.tex \
++	_updown_solve.tex \
++	_updown_mark.tex \
++	_updown_mask.tex \
++	_rowadd.tex \
++	_rowadd_solve.tex \
++	_rowadd_mark.tex \
++	_rowdel.tex \
++	_rowdel_solve.tex \
++	_rowdel_mark.tex
++
++_updown.tex: PATTERN = '/int cholmod_updown /, /\*\) ;/'
++_updown_solve.tex: PATTERN = '/int cholmod_updown_solve/, /\*\) ;/'
++_updown_mark.tex: PATTERN = '/int cholmod_updown_mark/, /\*\) ;/'
++_updown_mask.tex: PATTERN = '/int cholmod_updown_mask/, /\*\) ;/'
++_rowadd.tex: PATTERN = '/int cholmod_rowadd /, /\*\) ;/'
++_rowadd_solve.tex: PATTERN = '/int cholmod_rowadd_solve/, /\*\) ;/'
++_rowadd_mark.tex: PATTERN = '/int cholmod_rowadd_mark/, /\*\) ;/'
++_rowdel.tex: PATTERN = '/int cholmod_rowdel /, /\*\) ;/'
++_rowdel_solve.tex: PATTERN = '/int cholmod_rowdel_solve/, /\*\) ;/'
++_rowdel_mark.tex: PATTERN = '/int cholmod_rowdel_mark/, /\*\) ;/'
++
++$(PROTO_MODIFY): $(top_srcdir)/Include/cholmod_modify.h header.tex rule.awk footer.tex
++	$(getproto)
++
++PROTO_MATRIXOPS = \
++	_drop.tex \
++	_norm_dense.tex \
++	_norm_sparse.tex \
++	_horzcat.tex \
++	_scale.tex \
++	_sdmult.tex \
++	_ssmult.tex \
++	_submatrix.tex \
++	_vertcat.tex \
++	_symmetry.tex
++
++_drop.tex: PATTERN = '/int cholmod_drop/, /\*\) ;/'
++_norm_dense.tex: PATTERN = '/double cholmod_norm_dense/, /\*\) ;/'
++_norm_sparse.tex: PATTERN = '/double cholmod_norm_sparse/, /\*\) ;/'
++_horzcat.tex: PATTERN = '/cholmod_sparse \*cholmod_horzcat/, /\*\) ;/'
++_scale.tex: PATTERN = '/define CHOLMOD_SCALAR/, /\*\) ;/'
++_sdmult.tex: PATTERN = '/int cholmod_sdmult/, /\*\) ;/'
++_ssmult.tex: PATTERN = '/cholmod_sparse \*cholmod_ssmult/, /\*\) ;/'
++_submatrix.tex: PATTERN = '/cholmod_sparse \*cholmod_submatrix/, /\*\) ;/'
++_vertcat.tex: PATTERN = '/cholmod_sparse \*cholmod_vertcat/, /\*\) ;/'
++_symmetry.tex: PATTERN = '/int cholmod_symmetry/, /\*\) ;/'
++
++$(PROTO_MATRIXOPS): $(top_srcdir)/Include/cholmod_matrixops.h header.tex rule.awk footer.tex
++	$(getproto)
++
++PROTO_SUPERNODAL = \
++	_super_symbolic.tex \
++	_super_numeric.tex \
++	_super_lsolve.tex \
++	_super_ltsolve.tex
++
++_super_symbolic.tex: PATTERN = '/int cholmod_super_symbolic/, /\*\) ;/'
++_super_numeric.tex: PATTERN = '/int cholmod_super_numeric/, /\*\) ;/'
++_super_lsolve.tex: PATTERN = '/int cholmod_super_lsolve/, /\*\) ;/'
++_super_ltsolve.tex: PATTERN = '/int cholmod_super_ltsolve/, /\*\) ;/'
++
++$(PROTO_SUPERNODAL): $(top_srcdir)/Include/cholmod_supernodal.h header.tex rule.awk footer.tex
++	$(getproto)
++
++PROTO_PARTITION = \
++	_nested_dissection.tex \
++	_metis.tex \
++	_ccolamd.tex \
++	_camd.tex \
++	_csymamd.tex \
++	_bisect.tex \
++	_metis_bisector.tex \
++	_collapse_septree.tex
++
++_nested_dissection.tex: PATTERN = '/long cholmod_nested_dissection/, /\*\) ;/'
++_metis.tex: PATTERN = '/int cholmod_metis/, /\*\) ;/'
++_ccolamd.tex: PATTERN = '/int cholmod_ccolamd/, /\*\) ;/'
++_camd.tex: PATTERN = '/int cholmod_camd/, /\*\) ;/'
++_csymamd.tex: PATTERN = '/int cholmod_csymamd/, /\*\) ;/'
++_bisect.tex: PATTERN = '/long cholmod_bisect/, /\*\) ;/'
++_metis_bisector.tex: PATTERN = '/long cholmod_metis_bisector/, /\*\) ;/'
++_collapse_septree.tex: PATTERN = '/long cholmod_collapse_septree/, /\*\) ;/'
++
++$(PROTO_PARTITION): $(top_srcdir)/Include/cholmod_partition.h header.tex rule.awk footer.tex
++	$(getproto)
++
++PROTO = \
++	$(PROTO_M) \
++	$(PROTO_SIMPLE) \
++	$(PROTO_CORE) \
++	$(PROTO_CHECK) \
++	$(PROTO_CHOLESKY) \
++	$(PROTO_MODIFY) \
++	$(PROTO_MATRIXOPS) \
++	$(PROTO_SUPERNODAL) \
++	$(PROTO_PARTITION)
++
++CHOLMOD_UserGuide.pdf CHOLMOD_UserGuide.aux: $(PROTO)
++.INTERMEDIATE: CHOLMOD_UserGuide.aux $(PROTO)
++
++.INTERMEDIATE: CHOLMOD_UserGuide.bib
++CHOLMOD_UserGuide.bib: UserGuide.bib
++	$(LN_S) -f $< $@
++
++TEX = TEXINPUTS="$(srcdir):" pdflatex -interaction nonstopmode -file-line-error
++BIB = BIBINPUTS="$(srcdir):" bibtex
++%.pdf: %.tex %.bbl
++	$(TEX) $*
++	while grep -q "Rerun to get cross-references right" $*.log; do \
++		$(TEX) $*; \
++	done
++%.bbl: %.aux %.bib
++	$(BIB) $*
++%.aux: %.tex
++	$(TEX) $*
++
++CLEANFILES = _*.awk _*.tex *.dvi *.aux *.log *.lof *.lot *.toc *.bak *.bbl *.blg
++MAINTAINERCLEANFILES = $(dist_pdf_DATA)
+diff --git a/GPU/Makefile.am b/GPU/Makefile.am
+new file mode 100644
+--- /dev/null
++++ b/GPU/Makefile.am
+@@ -0,0 +1,26 @@
++AM_CFLAGS = $(OPENMP_CFLAGS)
++AM_CPPFLAGS = -I$(top_srcdir)/Include $(SUITESPARSECONFIG_CFLAGS)
++
++GPUSRC = \
++	cholmod_gpu.c
++
++EXTRA_DIST = \
++	cholmod_gpu_kernels.c \
++	cholmod_gpu_kernels.cu
++
++noinst_HEADERS = \
++	t_cholmod_gpu.c
++
++noinst_LTLIBRARIES = \
++	libgpui.la \
++	libgpul.la \
++	libgpu.la
++
++libgpui_la_SOURCES = $(GPUSRC)
++libgpui_la_CPPFLAGS = $(AM_CPPFLAGS)
++
++libgpul_la_SOURCES = $(GPUSRC)
++libgpul_la_CPPFLAGS = $(AM_CPPFLAGS) -DDLONG
++
++libgpu_la_SOURCES =
++libgpu_la_LIBADD = libgpui.la libgpul.la
+diff --git a/Include/Makefile.am b/Include/Makefile.am
+new file mode 100644
+--- /dev/null
++++ b/Include/Makefile.am
+@@ -0,0 +1,47 @@
++EXTRA_DIST = \
++	README.txt
++
++# Automatically generated headers
++nodist_pkginclude_HEADERS = \
++	cholmod_config.h
++
++pkginclude_HEADERS = \
++	cholmod.h \
++	cholmod_blas.h \
++	cholmod_core.h \
++	cholmod_function.h \
++	cholmod_gpu.h \
++	cholmod_io64.h
++
++noinst_HEADERS = \
++	cholmod_complexity.h \
++	cholmod_gpu_kernels.h \
++	cholmod_internal.h \
++	cholmod_template.h
++
++if MOD_CHECK
++pkginclude_HEADERS += cholmod_check.h
++endif
++
++if MOD_CHOLESKY
++pkginclude_HEADERS += cholmod_cholesky.h
++endif
++
++if MOD_PARTITION
++pkginclude_HEADERS += cholmod_camd.h
++if MOD_PARTITION_METIS
++pkginclude_HEADERS += cholmod_partition.h
++endif
++endif
++
++if MOD_MATRIXOPS
++pkginclude_HEADERS += cholmod_matrixops.h
++endif
++
++if MOD_MODIFY
++pkginclude_HEADERS += cholmod_modify.h
++endif
++
++if MOD_SUPERNODAL
++pkginclude_HEADERS += cholmod_supernodal.h
++endif
+diff --git a/Include/cholmod_config.h b/Include/cholmod_config.h.in
+rename from Include/cholmod_config.h
+rename to Include/cholmod_config.h.in
+--- a/Include/cholmod_config.h
++++ b/Include/cholmod_config.h.in
+@@ -45,16 +45,28 @@
+ /* Use the compiler flag, or uncomment the definition(s), if you want to use
+  * one or more non-default installation options: */
+ 
+-/*
+-#define NCHECK
+-#define NCHOLESKY
+-#define NCAMD
+-#define NPARTITION
++/* Define to disable the Check module */
++#undef NCHECK
+ 
+-#define NMATRIXOPS
+-#define NMODIFY
+-#define NSUPERNODAL
++/* Define to disable the Cholesky module */
++#undef NCHOLESKY
++
++/* Define to disable the Partition module */
++#undef NCAMD
++
++/* Define to disable METIS support in the Partition module */
++#undef NPARTITION
+ 
++/* Define to disable the MatrixOps module */
++#undef NMATRIXOPS
++
++/* Define to disable the Modify module */
++#undef NMODIFY
++
++/* Define to disable the Supernodal module */
++#undef NSUPERNODAL
++
++/*
+ #define NPRINT
+ 
+ #define LONGBLAS long
+@@ -62,6 +74,9 @@
+ #define NSUNPERF
+ */
+ 
++/* Define to disable GPL-licensed modules */
++#undef NGPL
++
+ /* The option disables the MatrixOps, Modify, and Supernodal modules.  The
+     existence of this #define here, and its use in these 3 modules, does not
+     affect the license itself; see CHOLMOD/Doc/License.txt for your actual
+diff --git a/MATLAB/Makefile.am b/MATLAB/Makefile.am
+new file mode 100644
+--- /dev/null
++++ b/MATLAB/Makefile.am
+@@ -0,0 +1,26 @@
++# Needed by Doc/Makefile.am
++EXTRA_DIST = \
++	analyze.m \
++	bisect.m \
++	chol2.m \
++	cholmod2.m \
++	cholmod_demo.m \
++	cholmod_make.m \
++	etree2.m \
++	graph_demo.m \
++	lchol.m \
++	ldl_normest.m \
++	ldlchol.m \
++	ldlsolve.m \
++	ldlsplit.m \
++	ldlupdate.m \
++	ldlrowmod.m \
++	metis.m \
++	mread.m \
++	mwrite.m \
++	nesdis.m \
++	resymbol.m \
++	sdmult.m \
++	sparse2.m \
++	spsym.m \
++	symbfact2.m
+diff --git a/Makefile.am b/Makefile.am
+new file mode 100644
+--- /dev/null
++++ b/Makefile.am
+@@ -0,0 +1,47 @@
++SUBDIRS = Include Core
++EXTRA_DIST = README.txt
++
++pkgconfig_DATA = cholmod.pc
++
++lib_LTLIBRARIES = libcholmod.la
++
++libcholmod_la_SOURCES =
++libcholmod_la_LIBADD = $(top_builddir)/Core/libcore.la
++libcholmod_la_LDFLAGS = -no-undefined -release $(PACKAGE_VERSION)
++
++if MOD_CHECK
++SUBDIRS += Check
++libcholmod_la_LIBADD += $(top_builddir)/Check/libcheck.la
++endif
++
++if MOD_CHOLESKY
++SUBDIRS += Cholesky
++libcholmod_la_LIBADD += $(top_builddir)/Cholesky/libcholesky.la
++endif
++
++if MOD_PARTITION
++SUBDIRS += Partition
++libcholmod_la_LIBADD += $(top_builddir)/Partition/libpartition.la
++endif
++
++if MOD_MATRIXOPS
++SUBDIRS += MatrixOps
++libcholmod_la_LIBADD += $(top_builddir)/MatrixOps/libmatrixops.la
++endif
++
++if MOD_MODIFY
++SUBDIRS += Modify
++libcholmod_la_LIBADD += $(top_builddir)/Modify/libmodify.la
++endif
++
++if MOD_SUPERNODAL
++SUBDIRS += Supernodal
++libcholmod_la_LIBADD += $(top_builddir)/Supernodal/libsupernodal.la
++endif
++
++if MOD_GPU
++SUBDIRS += GPU
++libcholmod_la_LIBADD += $(top_builddir)/GPU/libgpu.la
++endif
++
++SUBDIRS += MATLAB Demo Doc
+diff --git a/MatrixOps/Makefile.am b/MatrixOps/Makefile.am
+new file mode 100644
+--- /dev/null
++++ b/MatrixOps/Makefile.am
+@@ -0,0 +1,34 @@
++AM_CPPFLAGS = -I$(top_srcdir)/Include $(SUITESPARSECONFIG_CFLAGS)
++
++EXTRA_DIST = \
++	gpl.txt
++
++MATRIXOPSSRC = \
++	cholmod_drop.c \
++	cholmod_horzcat.c \
++	cholmod_norm.c \
++	cholmod_scale.c \
++	cholmod_sdmult.c \
++	cholmod_ssmult.c \
++	cholmod_submatrix.c \
++	cholmod_symmetry.c \
++	cholmod_vertcat.c
++
++noinst_HEADERS = \
++	t_cholmod_sdmult.c
++
++noinst_LTLIBRARIES = \
++	libmatrixopsi.la \
++	libmatrixopsl.la \
++	libmatrixops.la
++
++libmatrixopsi_la_SOURCES = $(MATRIXOPSSRC)
++libmatrixopsi_la_LIBADD = $(SUITESPARSECONFIG_LIBS) -lm
++libmatrixopsi_la_CPPFLAGS = $(AM_CPPFLAGS)
++
++libmatrixopsl_la_SOURCES = $(MATRIXOPSSRC)
++libmatrixopsl_la_LIBADD = $(SUITESPARSECONFIG_LIBS) -lm
++libmatrixopsl_la_CPPFLAGS = $(AM_CPPFLAGS) -DDLONG
++
++libmatrixops_la_SOURCES =
++libmatrixops_la_LIBADD = libmatrixopsi.la libmatrixopsl.la
+diff --git a/Modify/Makefile.am b/Modify/Makefile.am
+new file mode 100644
+--- /dev/null
++++ b/Modify/Makefile.am
+@@ -0,0 +1,29 @@
++AM_CPPFLAGS = -I$(top_srcdir)/Include $(SUITESPARSECONFIG_CFLAGS)
++
++EXTRA_DIST = \
++	gpl.txt
++
++MODIFYSRC = \
++	cholmod_rowadd.c \
++	cholmod_rowdel.c \
++	cholmod_updown.c
++
++noinst_HEADERS = \
++	t_cholmod_updown.c \
++	t_cholmod_updown_numkr.c
++
++noinst_LTLIBRARIES = \
++	libmodifyi.la \
++	libmodifyl.la \
++	libmodify.la
++
++libmodifyi_la_SOURCES = $(MODIFYSRC)
++libmodifyi_la_LIBADD = $(SUITESPARSECONFIG_LIBS) -lm
++libmodifyi_la_CPPFLAGS = $(AM_CPPFLAGS)
++
++libmodifyl_la_SOURCES = $(MODIFYSRC)
++libmodifyl_la_LIBADD = $(SUITESPARSECONFIG_LIBS) -lm
++libmodifyl_la_CPPFLAGS = $(AM_CPPFLAGS) -DDLONG
++
++libmodify_la_SOURCES =
++libmodify_la_LIBADD = libmodifyi.la libmodifyl.la
+diff --git a/Partition/Makefile.am b/Partition/Makefile.am
+new file mode 100644
+--- /dev/null
++++ b/Partition/Makefile.am
+@@ -0,0 +1,33 @@
++AM_CPPFLAGS = -I$(top_srcdir)/Include $(METIS_CFLAGS) $(CCOLAMD_CFLAGS) $(CAMD_CFLAGS) $(SUITESPARSECONFIG_CFLAGS)
++
++EXTRA_DIST = \
++	lesser.txt
++
++PARTITIONSRC = \
++	cholmod_camd.c \
++	cholmod_ccolamd.c \
++	cholmod_csymamd.c
++METISSRC = \
++	cholmod_metis.c \
++	cholmod_nesdis.c
++
++noinst_LTLIBRARIES = \
++	libpartitioni.la \
++	libpartitionl.la \
++	libpartition.la
++
++libpartitioni_la_SOURCES = $(PARTITIONSRC)
++libpartitioni_la_LIBADD = $(METIS_LIBS) $(CCOLAMD_LIBS) $(CAMD_LIBS) $(SUITESPARSECONFIG_LIBS) -lm
++libpartitioni_la_CPPFLAGS = $(AM_CPPFLAGS)
++
++libpartitionl_la_SOURCES = $(PARTITIONSRC)
++libpartitionl_la_LIBADD = $(METIS_LIBS) $(CCOLAMD_LIBS) $(CAMD_LIBS) $(SUITESPARSECONFIG_LIBS) -lm
++libpartitionl_la_CPPFLAGS = $(AM_CPPFLAGS) -DDLONG
++
++if MOD_PARTITION_METIS
++libpartitioni_la_SOURCES += $(METISSRC)
++libpartitionl_la_SOURCES += $(METISSRC)
++endif
++
++libpartition_la_SOURCES =
++libpartition_la_LIBADD = libpartitioni.la libpartitionl.la
+diff --git a/Supernodal/Makefile.am b/Supernodal/Makefile.am
+new file mode 100644
+--- /dev/null
++++ b/Supernodal/Makefile.am
+@@ -0,0 +1,35 @@
++AM_CFLAGS = $(OPENMP_CFLAGS)
++AM_CPPFLAGS = -I$(top_srcdir)/Include $(SUITESPARSECONFIG_CFLAGS)
++
++EXTRA_DIST = \
++	gpl.txt
++
++SUPERNODALSRC = \
++	cholmod_super_numeric.c \
++	cholmod_super_solve.c \
++	cholmod_super_symbolic.c
++
++noinst_HEADERS = \
++	t_cholmod_super_numeric.c \
++	t_cholmod_super_solve.c
++
++noinst_LTLIBRARIES = \
++	libsupernodali.la \
++	libsupernodall.la \
++	libsupernodal.la
++
++libsupernodali_la_SOURCES = $(SUPERNODALSRC)
++libsupernodali_la_LIBADD = $(LAPACK_LIBS) $(BLAS_LIBS) $(SUITESPARSECONFIG_LIBS)
++libsupernodali_la_CPPFLAGS = $(AM_CPPFLAGS)
++
++libsupernodall_la_SOURCES = $(SUPERNODALSRC)
++libsupernodall_la_LIBADD = $(LAPACK_LIBS) $(BLAS_LIBS) $(SUITESPARSECONFIG_LIBS)
++libsupernodall_la_CPPFLAGS = $(AM_CPPFLAGS) -DDLONG
++
++if !TIMING
++libsupernodali_la_CPPFLAGS += -DNTIMER
++libsupernodall_la_CPPFLAGS += -DNTIMER
++endif
++
++libsupernodal_la_SOURCES =
++libsupernodal_la_LIBADD = libsupernodali.la libsupernodall.la
+diff --git a/ax_blas.m4 b/ax_blas.m4
+new file mode 100644
+--- /dev/null
++++ b/ax_blas.m4
+@@ -0,0 +1,238 @@
++# ===========================================================================
++#          http://www.gnu.org/software/autoconf-archive/ax_blas.html
++# ===========================================================================
++#
++# SYNOPSIS
++#
++#   AX_BLAS([ACTION-IF-FOUND[, ACTION-IF-NOT-FOUND]])
++#
++# DESCRIPTION
++#
++#   This macro looks for a library that implements the BLAS linear-algebra
++#   interface (see http://www.netlib.org/blas/). On success, it sets the
++#   BLAS_LIBS output variable to hold the requisite library linkages.
++#
++#   To link with BLAS, you should link with:
++#
++#     $BLAS_LIBS $LIBS $FLIBS
++#
++#   in that order. FLIBS is the output variable of the
++#   AC_F77_LIBRARY_LDFLAGS macro (called if necessary by AX_BLAS), and is
++#   sometimes necessary in order to link with F77 libraries. Users will also
++#   need to use AC_F77_DUMMY_MAIN (see the autoconf manual), for the same
++#   reason.
++#
++#   Many libraries are searched for, from ATLAS to CXML to ESSL. The user
++#   may also use --with-blas=<lib> in order to use some specific BLAS
++#   library <lib>. In order to link successfully, however, be aware that you
++#   will probably need to use the same Fortran compiler (which can be set
++#   via the F77 env. var.) as was used to compile the BLAS library.
++#
++#   ACTION-IF-FOUND is a list of shell commands to run if a BLAS library is
++#   found, and ACTION-IF-NOT-FOUND is a list of commands to run it if it is
++#   not found. If ACTION-IF-FOUND is not specified, the default action will
++#   define HAVE_BLAS.
++#
++# LICENSE
++#
++#   Copyright (c) 2008 Steven G. Johnson <stevenj@alum.mit.edu>
++#
++#   This program is free software: you can redistribute it and/or modify it
++#   under the terms of the GNU General Public License as published by the
++#   Free Software Foundation, either version 3 of the License, or (at your
++#   option) any later version.
++#
++#   This program is distributed in the hope that it will be useful, but
++#   WITHOUT ANY WARRANTY; without even the implied warranty of
++#   MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General
++#   Public License for more details.
++#
++#   You should have received a copy of the GNU General Public License along
++#   with this program. If not, see <http://www.gnu.org/licenses/>.
++#
++#   As a special exception, the respective Autoconf Macro's copyright owner
++#   gives unlimited permission to copy, distribute and modify the configure
++#   scripts that are the output of Autoconf when processing the Macro. You
++#   need not follow the terms of the GNU General Public License when using
++#   or distributing such scripts, even though portions of the text of the
++#   Macro appear in them. The GNU General Public License (GPL) does govern
++#   all other use of the material that constitutes the Autoconf Macro.
++#
++#   This special exception to the GPL applies to versions of the Autoconf
++#   Macro released by the Autoconf Archive. When you make and distribute a
++#   modified version of the Autoconf Macro, you may extend this special
++#   exception to the GPL to apply to your modified version as well.
++
++#serial 14
++
++AU_ALIAS([ACX_BLAS], [AX_BLAS])
++AC_DEFUN([AX_BLAS], [
++AC_PREREQ(2.50)
++AC_REQUIRE([AC_F77_LIBRARY_LDFLAGS])
++AC_REQUIRE([AC_CANONICAL_HOST])
++ax_blas_ok=no
++
++AC_ARG_WITH(blas,
++	[AS_HELP_STRING([--with-blas=<lib>], [use BLAS library <lib>])])
++case $with_blas in
++	yes | "") ;;
++	no) ax_blas_ok=disable ;;
++	-* | */* | *.a | *.so | *.so.* | *.o) BLAS_LIBS="$with_blas" ;;
++	*) BLAS_LIBS="-l$with_blas" ;;
++esac
++
++# Get fortran linker names of BLAS functions to check for.
++AC_F77_FUNC(sgemm)
++AC_F77_FUNC(dgemm)
++
++ax_blas_save_LIBS="$LIBS"
++LIBS="$LIBS $FLIBS"
++
++# First, check BLAS_LIBS environment variable
++if test $ax_blas_ok = no; then
++if test "x$BLAS_LIBS" != x; then
++	save_LIBS="$LIBS"; LIBS="$BLAS_LIBS $LIBS"
++	AC_MSG_CHECKING([for $sgemm in $BLAS_LIBS])
++	AC_TRY_LINK_FUNC($sgemm, [ax_blas_ok=yes], [BLAS_LIBS=""])
++	AC_MSG_RESULT($ax_blas_ok)
++	LIBS="$save_LIBS"
++fi
++fi
++
++# BLAS linked to by default?  (happens on some supercomputers)
++if test $ax_blas_ok = no; then
++	save_LIBS="$LIBS"; LIBS="$LIBS"
++	AC_MSG_CHECKING([if $sgemm is being linked in already])
++	AC_TRY_LINK_FUNC($sgemm, [ax_blas_ok=yes])
++	AC_MSG_RESULT($ax_blas_ok)
++	LIBS="$save_LIBS"
++fi
++
++# BLAS in OpenBLAS library? (http://xianyi.github.com/OpenBLAS/)
++if test $ax_blas_ok = no; then
++	AC_CHECK_LIB(openblas, $sgemm, [ax_blas_ok=yes
++			                BLAS_LIBS="-lopenblas"])
++fi
++
++# BLAS in ATLAS library? (http://math-atlas.sourceforge.net/)
++if test $ax_blas_ok = no; then
++	AC_CHECK_LIB(atlas, ATL_xerbla,
++		[AC_CHECK_LIB(f77blas, $sgemm,
++		[AC_CHECK_LIB(cblas, cblas_dgemm,
++			[ax_blas_ok=yes
++			 BLAS_LIBS="-lcblas -lf77blas -latlas"],
++			[], [-lf77blas -latlas])],
++			[], [-latlas])])
++fi
++
++# BLAS in PhiPACK libraries? (requires generic BLAS lib, too)
++if test $ax_blas_ok = no; then
++	AC_CHECK_LIB(blas, $sgemm,
++		[AC_CHECK_LIB(dgemm, $dgemm,
++		[AC_CHECK_LIB(sgemm, $sgemm,
++			[ax_blas_ok=yes; BLAS_LIBS="-lsgemm -ldgemm -lblas"],
++			[], [-lblas])],
++			[], [-lblas])])
++fi
++
++# BLAS in Intel MKL library?
++if test $ax_blas_ok = no; then
++	# MKL for gfortran
++	if test x"$ac_cv_fc_compiler_gnu" = xyes; then
++		# 64 bit
++		if test $host_cpu = x86_64; then
++			AC_CHECK_LIB(mkl_gf_lp64, $sgemm,
++			[ax_blas_ok=yes;BLAS_LIBS="-lmkl_gf_lp64 -lmkl_sequential -lmkl_core -lpthread"],,
++			[-lmkl_gf_lp64 -lmkl_sequential -lmkl_core -lpthread])
++		# 32 bit
++		elif test $host_cpu = i686; then
++			AC_CHECK_LIB(mkl_gf, $sgemm,
++				[ax_blas_ok=yes;BLAS_LIBS="-lmkl_gf -lmkl_sequential -lmkl_core -lpthread"],,
++				[-lmkl_gf -lmkl_sequential -lmkl_core -lpthread])
++		fi
++	# MKL for other compilers (Intel, PGI, ...?)
++	else
++		# 64-bit
++		if test $host_cpu = x86_64; then
++			AC_CHECK_LIB(mkl_intel_lp64, $sgemm,
++				[ax_blas_ok=yes;BLAS_LIBS="-lmkl_intel_lp64 -lmkl_sequential -lmkl_core -lpthread"],,
++				[-lmkl_intel_lp64 -lmkl_sequential -lmkl_core -lpthread])
++		# 32-bit
++		elif test $host_cpu = i686; then
++			AC_CHECK_LIB(mkl_intel, $sgemm,
++				[ax_blas_ok=yes;BLAS_LIBS="-lmkl_intel -lmkl_sequential -lmkl_core -lpthread"],,
++				[-lmkl_intel -lmkl_sequential -lmkl_core -lpthread])
++		fi
++	fi
++fi
++# Old versions of MKL
++if test $ax_blas_ok = no; then
++	AC_CHECK_LIB(mkl, $sgemm, [ax_blas_ok=yes;BLAS_LIBS="-lmkl -lguide -lpthread"],,[-lguide -lpthread])
++fi
++
++# BLAS in Apple vecLib library?
++if test $ax_blas_ok = no; then
++	save_LIBS="$LIBS"; LIBS="-framework vecLib $LIBS"
++	AC_MSG_CHECKING([for $sgemm in -framework vecLib])
++	AC_TRY_LINK_FUNC($sgemm, [ax_blas_ok=yes;BLAS_LIBS="-framework vecLib"])
++	AC_MSG_RESULT($ax_blas_ok)
++	LIBS="$save_LIBS"
++fi
++
++# BLAS in Alpha CXML library?
++if test $ax_blas_ok = no; then
++	AC_CHECK_LIB(cxml, $sgemm, [ax_blas_ok=yes;BLAS_LIBS="-lcxml"])
++fi
++
++# BLAS in Alpha DXML library? (now called CXML, see above)
++if test $ax_blas_ok = no; then
++	AC_CHECK_LIB(dxml, $sgemm, [ax_blas_ok=yes;BLAS_LIBS="-ldxml"])
++fi
++
++# BLAS in Sun Performance library?
++if test $ax_blas_ok = no; then
++	if test "x$GCC" != xyes; then # only works with Sun CC
++		AC_CHECK_LIB(sunmath, acosp,
++			[AC_CHECK_LIB(sunperf, $sgemm,
++				[BLAS_LIBS="-xlic_lib=sunperf -lsunmath"
++                                 ax_blas_ok=yes],[],[-lsunmath])])
++	fi
++fi
++
++# BLAS in SCSL library?  (SGI/Cray Scientific Library)
++if test $ax_blas_ok = no; then
++	AC_CHECK_LIB(scs, $sgemm, [ax_blas_ok=yes; BLAS_LIBS="-lscs"])
++fi
++
++# BLAS in SGIMATH library?
++if test $ax_blas_ok = no; then
++	AC_CHECK_LIB(complib.sgimath, $sgemm,
++		     [ax_blas_ok=yes; BLAS_LIBS="-lcomplib.sgimath"])
++fi
++
++# BLAS in IBM ESSL library? (requires generic BLAS lib, too)
++if test $ax_blas_ok = no; then
++	AC_CHECK_LIB(blas, $sgemm,
++		[AC_CHECK_LIB(essl, $sgemm,
++			[ax_blas_ok=yes; BLAS_LIBS="-lessl -lblas"],
++			[], [-lblas $FLIBS])])
++fi
++
++# Generic BLAS library?
++if test $ax_blas_ok = no; then
++	AC_CHECK_LIB(blas, $sgemm, [ax_blas_ok=yes; BLAS_LIBS="-lblas"])
++fi
++
++AC_SUBST(BLAS_LIBS)
++
++LIBS="$ax_blas_save_LIBS"
++
++# Finally, execute ACTION-IF-FOUND/ACTION-IF-NOT-FOUND:
++if test x"$ax_blas_ok" = xyes; then
++        ifelse([$1],,AC_DEFINE(HAVE_BLAS,1,[Define if you have a BLAS library.]),[$1])
++        :
++else
++        ax_blas_ok=no
++        $2
++fi
++])dnl AX_BLAS
+diff --git a/ax_lapack.m4 b/ax_lapack.m4
+new file mode 100644
+--- /dev/null
++++ b/ax_lapack.m4
+@@ -0,0 +1,131 @@
++# ===========================================================================
++#         http://www.gnu.org/software/autoconf-archive/ax_lapack.html
++# ===========================================================================
++#
++# SYNOPSIS
++#
++#   AX_LAPACK([ACTION-IF-FOUND[, ACTION-IF-NOT-FOUND]])
++#
++# DESCRIPTION
++#
++#   This macro looks for a library that implements the LAPACK linear-algebra
++#   interface (see http://www.netlib.org/lapack/). On success, it sets the
++#   LAPACK_LIBS output variable to hold the requisite library linkages.
++#
++#   To link with LAPACK, you should link with:
++#
++#     $LAPACK_LIBS $BLAS_LIBS $LIBS $FLIBS
++#
++#   in that order. BLAS_LIBS is the output variable of the AX_BLAS macro,
++#   called automatically. FLIBS is the output variable of the
++#   AC_F77_LIBRARY_LDFLAGS macro (called if necessary by AX_BLAS), and is
++#   sometimes necessary in order to link with F77 libraries. Users will also
++#   need to use AC_F77_DUMMY_MAIN (see the autoconf manual), for the same
++#   reason.
++#
++#   The user may also use --with-lapack=<lib> in order to use some specific
++#   LAPACK library <lib>. In order to link successfully, however, be aware
++#   that you will probably need to use the same Fortran compiler (which can
++#   be set via the F77 env. var.) as was used to compile the LAPACK and BLAS
++#   libraries.
++#
++#   ACTION-IF-FOUND is a list of shell commands to run if a LAPACK library
++#   is found, and ACTION-IF-NOT-FOUND is a list of commands to run it if it
++#   is not found. If ACTION-IF-FOUND is not specified, the default action
++#   will define HAVE_LAPACK.
++#
++# LICENSE
++#
++#   Copyright (c) 2009 Steven G. Johnson <stevenj@alum.mit.edu>
++#
++#   This program is free software: you can redistribute it and/or modify it
++#   under the terms of the GNU General Public License as published by the
++#   Free Software Foundation, either version 3 of the License, or (at your
++#   option) any later version.
++#
++#   This program is distributed in the hope that it will be useful, but
++#   WITHOUT ANY WARRANTY; without even the implied warranty of
++#   MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General
++#   Public License for more details.
++#
++#   You should have received a copy of the GNU General Public License along
++#   with this program. If not, see <http://www.gnu.org/licenses/>.
++#
++#   As a special exception, the respective Autoconf Macro's copyright owner
++#   gives unlimited permission to copy, distribute and modify the configure
++#   scripts that are the output of Autoconf when processing the Macro. You
++#   need not follow the terms of the GNU General Public License when using
++#   or distributing such scripts, even though portions of the text of the
++#   Macro appear in them. The GNU General Public License (GPL) does govern
++#   all other use of the material that constitutes the Autoconf Macro.
++#
++#   This special exception to the GPL applies to versions of the Autoconf
++#   Macro released by the Autoconf Archive. When you make and distribute a
++#   modified version of the Autoconf Macro, you may extend this special
++#   exception to the GPL to apply to your modified version as well.
++
++#serial 7
++
++AU_ALIAS([ACX_LAPACK], [AX_LAPACK])
++AC_DEFUN([AX_LAPACK], [
++AC_REQUIRE([AX_BLAS])
++ax_lapack_ok=no
++
++AC_ARG_WITH(lapack,
++        [AS_HELP_STRING([--with-lapack=<lib>], [use LAPACK library <lib>])])
++case $with_lapack in
++        yes | "") ;;
++        no) ax_lapack_ok=disable ;;
++        -* | */* | *.a | *.so | *.so.* | *.o) LAPACK_LIBS="$with_lapack" ;;
++        *) LAPACK_LIBS="-l$with_lapack" ;;
++esac
++
++# Get fortran linker name of LAPACK function to check for.
++AC_F77_FUNC(cheev)
++
++# We cannot use LAPACK if BLAS is not found
++if test "x$ax_blas_ok" != xyes; then
++        ax_lapack_ok=noblas
++        LAPACK_LIBS=""
++fi
++
++# First, check LAPACK_LIBS environment variable
++if test "x$LAPACK_LIBS" != x; then
++        save_LIBS="$LIBS"; LIBS="$LAPACK_LIBS $BLAS_LIBS $LIBS $FLIBS"
++        AC_MSG_CHECKING([for $cheev in $LAPACK_LIBS])
++        AC_TRY_LINK_FUNC($cheev, [ax_lapack_ok=yes], [LAPACK_LIBS=""])
++        AC_MSG_RESULT($ax_lapack_ok)
++        LIBS="$save_LIBS"
++        if test $ax_lapack_ok = no; then
++                LAPACK_LIBS=""
++        fi
++fi
++
++# LAPACK linked to by default?  (is sometimes included in BLAS lib)
++if test $ax_lapack_ok = no; then
++        save_LIBS="$LIBS"; LIBS="$LIBS $BLAS_LIBS $FLIBS"
++        AC_CHECK_FUNC($cheev, [ax_lapack_ok=yes])
++        LIBS="$save_LIBS"
++fi
++
++# Generic LAPACK library?
++for lapack in lapack lapack_rs6k; do
++        if test $ax_lapack_ok = no; then
++                save_LIBS="$LIBS"; LIBS="$BLAS_LIBS $LIBS"
++                AC_CHECK_LIB($lapack, $cheev,
++                    [ax_lapack_ok=yes; LAPACK_LIBS="-l$lapack"], [], [$FLIBS])
++                LIBS="$save_LIBS"
++        fi
++done
++
++AC_SUBST(LAPACK_LIBS)
++
++# Finally, execute ACTION-IF-FOUND/ACTION-IF-NOT-FOUND:
++if test x"$ax_lapack_ok" = xyes; then
++        ifelse([$1],,AC_DEFINE(HAVE_LAPACK,1,[Define if you have LAPACK library.]),[$1])
++        :
++else
++        ax_lapack_ok=no
++        $2
++fi
++])dnl AX_LAPACK
+diff --git a/cholmod.pc.in b/cholmod.pc.in
+new file mode 100644
+--- /dev/null
++++ b/cholmod.pc.in
+@@ -0,0 +1,13 @@
++prefix=@prefix@
++exec_prefix=@exec_prefix@
++libdir=@libdir@
++includedir=@includedir@
++
++Name: @PACKAGE_NAME@
++Description: Sparse Cholesky factorization
++Version: @PACKAGE_VERSION@
++URL: @PACKAGE_URL@
++Requires.private: @CHOLMOD_REQUIRES@
++Libs: -L${libdir} -lcholmod
++Libs.private: @LAPACK_LIBS@ @BLAS_LIBS@ -lm
++Cflags: -I${includedir}/cholmod
+diff --git a/configure.ac b/configure.ac
+new file mode 100644
+--- /dev/null
++++ b/configure.ac
+@@ -0,0 +1,217 @@
++#                                               -*- Autoconf -*-
++# Process this file with autoconf to produce a configure script.
++
++AC_PREREQ([2.69])
++AC_INIT([CHOLMOD],[3.0.11],[DrTimothyAldenDavis@gmail.com],[cholmod],[http://www.suitesparse.com/])
++AC_CONFIG_SRCDIR([Core/cholmod_common.c])
++AC_CONFIG_HEADERS([config.h Include/cholmod_config.h])
++AM_INIT_AUTOMAKE([foreign])
++LT_INIT
++
++# Checks for programs.
++PKG_PROG_PKG_CONFIG
++AC_PROG_INSTALL
++AC_PROG_CC
++AC_PROG_F77
++AC_PROG_AWK
++AC_OPENMP
++
++AC_ARG_ENABLE([mod-check],
++	[AS_HELP_STRING(
++		[--disable-mod-check],
++		[do not build the Check module])],
++	[],
++	[AS_VAR_SET([enable_mod_check], [yes])])
++
++AC_ARG_ENABLE([mod-cholesky],
++	[AS_HELP_STRING(
++		[--disable-mod-cholesky],
++		[do not build the Cholesky module])],
++	[],
++	[AS_VAR_SET([enable_mod_cholesky], [yes])])
++
++AC_ARG_ENABLE([mod-partition],
++	[AS_HELP_STRING(
++		[--disable-mod-partition],
++		[do not build the Partition module])],
++	[],
++	[AS_VAR_SET([enable_mod_partition], [yes])])
++
++AC_ARG_ENABLE([mod-matrixops],
++	[AS_HELP_STRING(
++		[--disable-mod-matrixops],
++		[do not build the MatrixOps module])],
++	[],
++	[AS_VAR_SET([enable_mod_matrixops], [yes])])
++
++AC_ARG_ENABLE([mod-modify],
++	[AS_HELP_STRING(
++		[--disable-mod-modify],
++		[do not build the Modify module])],
++	[],
++	[AS_VAR_SET([enable_mod_modify], [yes])])
++
++AC_ARG_ENABLE([mod-supernodal],
++	[AS_HELP_STRING(
++		[--disable-mod-supernodal],
++		[do not build the Supernodal module])],
++	[],
++	[AS_VAR_SET([enable_mod_supernodal], [yes])])
++
++AC_ARG_ENABLE([gpl-modules],
++	[AS_HELP_STRING(
++		[--disable-gpl-modules],
++		[do not build GPL-licensed modules])],
++	[],
++	[AS_VAR_SET([enable_gpl_modules], [yes])])
++
++AC_ARG_ENABLE([timing],
++	[AS_HELP_STRING(
++		[--disable-timing],
++		[do not use timing routines])],
++	[],
++	[AS_VAR_SET([enable_timing], [yes])])
++
++AS_VAR_SET([LIBS_SAVED], [$LIBS])
++
++# Checks for libraries.
++AC_CHECK_LIB([m], [sqrt])
++
++PKG_CHECK_MODULES([SUITESPARSECONFIG], [suitesparseconfig])
++AS_VAR_SET([CHOLMOD_REQUIRES], ["suitesparseconfig"])
++
++AS_IF([test "x$enable_gpl_modules" != "xyes"], [
++	AC_DEFINE([NGPL], [], [Define to disable GPL-licensed modules])
++	AS_VAR_SET([enable_mod_matrixops], [no])
++	AS_VAR_SET([enable_mod_modify], [no])
++	AS_VAR_SET([enable_mod_supernodal], [no])
++])
++
++AS_IF([test "x$enable_mod_check" != "xyes"], [
++	AC_DEFINE([NCHECK], [], [Define to disable the Check module])
++])
++
++AS_IF([test "x$enable_mod_cholesky" != "xyes"], [
++	AC_DEFINE([NCHOLESKY], [], [Define to disable the Cholesky module])
++], [
++	PKG_CHECK_MODULES([AMD], [amd],
++		[AS_VAR_APPEND([CHOLMOD_REQUIRES], [" amd"])],
++		[AC_MSG_ERROR([$AMD_PKG_ERRORS (required by mod-cholesky)])])
++
++	PKG_CHECK_MODULES([COLAMD], [colamd],
++		[AS_VAR_APPEND([CHOLMOD_REQUIRES], [" colamd"])],
++		[AC_MSG_ERROR([$COLAMD_PKG_ERRORS (required by mod-cholesky)])])
++])
++
++AS_IF([test "x$enable_mod_partition" != "xyes"], [
++	AC_DEFINE([NCAMD], [], [Define to disable the Partition module])
++], [
++	PKG_CHECK_MODULES([CAMD], [camd],
++		[AS_VAR_APPEND([CHOLMOD_REQUIRES], [" camd"])],
++		[AC_MSG_ERROR([$CAMD_PKG_ERRORS (required by mod-partition)])])
++
++	PKG_CHECK_MODULES([CCOLAMD], [ccolamd],
++		[AS_VAR_APPEND([CHOLMOD_REQUIRES], [" ccolamd"])],
++		[AC_MSG_ERROR([$CCOLAMD_PKG_ERRORS (required by mod-partition)])])
++
++	PKG_CHECK_MODULES([METIS], [metis >= 5.1.0],
++		[AS_VAR_SET([have_metis], [yes])
++		 AS_VAR_APPEND([CHOLMOD_REQUIRES], [" metis >= 5.1.0"])],
++		[AS_VAR_SET([have_metis], [no])
++		 AC_MSG_WARN([$METIS_PKG_ERRORS (used by mod-partition), disabling some functionality])])
++])
++
++AS_IF([test "x$have_metis" != "xyes"], [
++	AC_DEFINE([NPARTITION], [], [Define to disable METIS support in the Partition module])
++])
++
++AS_IF([test "x$enable_mod_matrixops" != "xyes"], [
++	AC_DEFINE([NMATRIXOPS], [], [Define to disable the MatrixOps module])
++])
++
++AS_IF([test "x$enable_mod_modify" != "xyes"], [
++	AC_DEFINE([NMODIFY], [], [Define to disable the Modify module])
++])
++
++AS_IF([test "x$enable_mod_supernodal" != "xyes"], [
++	AC_DEFINE([NSUPERNODAL], [], [Define to disable the Supernodal module])
++], [
++	sinclude([ax_blas.m4])
++	AX_BLAS(
++		[],
++		[AC_MSG_ERROR([cannot find BLAS (required by mod-supernodal)])])
++
++	sinclude([ax_lapack.m4])
++	AX_LAPACK(
++		[],
++		[AC_MSG_ERROR([cannot find LAPACK (required by mod-supernodal)])])
++])
++
++# Checks for header files.
++AC_CHECK_HEADERS([float.h limits.h stddef.h stdlib.h string.h])
++
++# Checks for typedefs, structures, and compiler characteristics.
++AC_TYPE_SIZE_T
++
++# Checks for library functions.
++AC_FUNC_MALLOC
++AC_CHECK_FUNCS([sqrt])
++
++AS_VAR_SET([LIBS], [$LIBS_SAVED])
++
++AC_MSG_CHECKING([whether to build mod-check])
++AC_MSG_RESULT([$enable_mod_check])
++AM_CONDITIONAL([MOD_CHECK], [test "x$enable_mod_check" = "xyes"])
++
++AC_MSG_CHECKING([whether to build mod-cholesky])
++AC_MSG_RESULT([$enable_mod_cholesky])
++AM_CONDITIONAL([MOD_CHOLESKY], [test "x$enable_mod_cholesky" = "xyes"])
++
++AC_MSG_CHECKING([whether to build mod-partition])
++AC_MSG_RESULT([$enable_mod_partition])
++AM_CONDITIONAL([MOD_PARTITION], [test "x$enable_mod_partition" = "xyes"])
++
++AC_MSG_CHECKING([whether to build mod-partition with METIS])
++AC_MSG_RESULT([$have_metis])
++AM_CONDITIONAL([MOD_PARTITION_METIS], [test "x$have_metis" = "xyes"])
++
++AC_MSG_CHECKING([whether to build mod-matrixops])
++AC_MSG_RESULT([$enable_mod_matrixops])
++AM_CONDITIONAL([MOD_MATRIXOPS], [test "x$enable_mod_matrixops" = "xyes"])
++
++AC_MSG_CHECKING([whether to build mod-modify])
++AC_MSG_RESULT([$enable_mod_modify])
++AM_CONDITIONAL([MOD_MODIFY], [test "x$enable_mod_modify" = "xyes"])
++
++AC_MSG_CHECKING([whether to build mod-supernodal])
++AC_MSG_RESULT([$enable_mod_supernodal])
++AM_CONDITIONAL([MOD_SUPERNODAL], [test "x$enable_mod_supernodal" = "xyes"])
++
++AC_MSG_CHECKING([whether to build mod-gpu])
++AC_MSG_RESULT([no])
++AM_CONDITIONAL([MOD_GPU], [false])
++
++AC_MSG_CHECKING([whether to use timing routines])
++AC_MSG_RESULT([$enable_timing])
++AM_CONDITIONAL([TIMING], [test "x$enable_timing" = "xyes"])
++
++AC_SUBST([CHOLMOD_REQUIRES])
++
++PKG_INSTALLDIR
++AC_CONFIG_FILES([
++	cholmod.pc
++	Makefile
++	Check/Makefile
++	Cholesky/Makefile
++	Core/Makefile
++	Demo/Makefile
++	Doc/Makefile
++	GPU/Makefile
++	Include/Makefile
++	MATLAB/Makefile
++	MatrixOps/Makefile
++	Modify/Makefile
++	Partition/Makefile
++	Supernodal/Makefile
++])
++AC_OUTPUT