diff options
| author | Petar Petrov <petar.petrov@student.oulu.fi> | 2013-12-14 07:31:21 +0700 |
|---|---|---|
| committer | Erik Hanson <erik@slackbuilds.org> | 2013-12-14 10:53:05 -0600 |
| commit | 70013017755f78c0636a880522351dc5b588277e (patch) | |
| tree | eac41e23ff997e41eb9b813e8fed747f6d8ac8ea /academic/bowtie/bowtie.SlackBuild | |
| parent | ca3a131931b1c0a9fca77630daddd3349048a569 (diff) | |
academic/bowtie: Updated for version 1.0.0.
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
Diffstat (limited to 'academic/bowtie/bowtie.SlackBuild')
| -rw-r--r-- | academic/bowtie/bowtie.SlackBuild | 22 |
1 files changed, 14 insertions, 8 deletions
diff --git a/academic/bowtie/bowtie.SlackBuild b/academic/bowtie/bowtie.SlackBuild index a4b3ce38e64ad..cb9ab8a4fc6d5 100644 --- a/academic/bowtie/bowtie.SlackBuild +++ b/academic/bowtie/bowtie.SlackBuild @@ -2,7 +2,7 @@ # Slackware build script for bowtie -# Copyright 2013 Petar Petrov, ppetrov@paju.oulu.fi +# Copyright 2013 Petar Petrov, petar.petrov@student.oulu.fi # All rights reserved. # # Redistribution and use of this script, with or without modification, is @@ -23,7 +23,7 @@ # ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. PRGNAM=bowtie -VERSION=${VERSION:-0.12.9} +VERSION=${VERSION:-1.0.0} BUILD=${BUILD:-1} TAG=${TAG:-_SBo} @@ -60,14 +60,20 @@ rm -rf $PKG mkdir -p $TMP $PKG $OUTPUT cd $TMP rm -rf $PRGNAM-$VERSION -unzip $CWD/$PRGNAM-$VERSION-src.zip +tar xvf $CWD/${PRGNAM}_${VERSION}.orig.tar.gz cd $PRGNAM-$VERSION chown -R root:root . find -L . \ - \( -perm 777 -o -perm 775 -o -perm 750 -o -perm 711 -o -perm 555 -o -perm 511 \) \ - -exec chmod 755 {} \; -o \ - \( -perm 666 -o -perm 664 -o -perm 600 -o -perm 444 -o -perm 440 -o -perm 400 \) \ - -exec chmod 644 {} \; + \( -perm 777 -o -perm 775 -o -perm 750 -o -perm 711 -o -perm 555 \ + -o -perm 511 \) -exec chmod 755 {} \; -o \ + \( -perm 666 -o -perm 664 -o -perm 640 -o -perm 600 -o -perm 444 \ + -o -perm 440 -o -perm 400 \) -exec chmod 644 {} \; + +# Thanks to Debian for the set of patches! +patch -p1 -i $CWD/patches/disable_bits_flag.patch +patch -p1 -i $CWD/patches/no_hash_style_both_for_mips.patch +patch -p1 -i $CWD/patches/seqan-fix-setBegin-call.patch +patch -p1 -i $CWD/patches/use-dpkg-buildflags.patch CFLAGS="$SLKCFLAGS" \ CXXFLAGS="$SLKCFLAGS" \ @@ -92,7 +98,7 @@ find $PKG -print0 | xargs -0 file | grep -e "executable" -e "shared object" | gr mkdir -p $PKG/usr/doc/$PRGNAM-$VERSION cp -a \ - AUTHORS COPYING MANUAL NEWS TUTORIAL VERSION doc \ + AUTHORS LICENSE MANUAL NEWS TUTORIAL VERSION doc \ $PKG/usr/doc/$PRGNAM-$VERSION cat $CWD/$PRGNAM.SlackBuild > $PKG/usr/doc/$PRGNAM-$VERSION/$PRGNAM.SlackBuild cat $CWD/References > $PKG/usr/doc/$PRGNAM-$VERSION/References |