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| author | B. Watson <yalhcru@gmail.com> | 2020-10-11 15:36:48 -0400 |
|---|---|---|
| committer | Willy Sudiarto Raharjo <willysr@slackbuilds.org> | 2020-10-17 09:36:37 +0700 |
| commit | 57ba91195da6ef343c720f305d0cddf056f78d10 (patch) | |
| tree | ca9d2ff580ce1a3265a7cd39dce4de6e75c9a23b /academic/ViennaRNA | |
| parent | a37908e881a0fcf2aef608cacbccbb2954ab36eb (diff) | |
academic/ViennaRNA: Fix README.
Signed-off-by: B. Watson <yalhcru@gmail.com>
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
Diffstat (limited to 'academic/ViennaRNA')
| -rw-r--r-- | academic/ViennaRNA/README | 33 |
1 files changed, 18 insertions, 15 deletions
diff --git a/academic/ViennaRNA/README b/academic/ViennaRNA/README index 6ad531d628a7..a82c7160b2d5 100644 --- a/academic/ViennaRNA/README +++ b/academic/ViennaRNA/README @@ -7,8 +7,9 @@ A tutorial (see /usr/doc/$PRGNAM-$VERSION/RNA-tutorial-$VERSION.pdf) and examples can be found in /usr/share/$PRGNAM/tutorial and /usr/share/$PRGNAM/examples -For those who wish to link the Vienna package to their own C, perl or python programs (see below), -the RNAlib Reference Manual can be assessed at: +For those who wish to link the Vienna package to their own C, perl +or python programs (see below), the RNAlib Reference Manual can be +assessed at: https://www.tbi.univie.ac.at/RNA/ViennaRNA/doc/html/index.html (or unpacked from the src: $PRGNAM-$VERSION/doc/html/) @@ -22,29 +23,31 @@ Amongst other things, the ViennRNA implementations allow you to: - compute various equilibrium probabilities - calculate suboptimal structures in a given energy range - compute local structures in long sequences -- predict consensus secondary structures from a multiple sequence alignment +- predict consensus secondary structures from a multiple sequence + alignment - predict melting curves - search for sequences folding into a given structure - compare two secondary structures - predict hybridization structures of two RNA molecules -The package includes `Perl 5` and `Python 3` modules that give -access to almost all functions of the C library from within the respective +The package includes `Perl 5` and `Python 3` modules that give access +to almost all functions of the C library from within the respective scripting languages. For this reason, python3 is a dependency -The `Python 2` module can be built as well, or instead of the one for `Python 3`; -just edit the SlackBuild or run it by setting build options PYTHON=yes PYTHON3=no. -(e.g. in sbopkg or run it from the commandline -within the directory containing -the SlackBuild script and downloaded source archive- as: -`PYTHON=yes PYTHON3=no ./ViennaRNA.SlackBuild`) +The `Python 2` module can be built as well, or instead of the one +for `Python 3`; just edit the SlackBuild or run it by setting build +options PYTHON=yes PYTHON3=no. (e.g. in sbopkg or run it from +the commandline -within the directory containing the SlackBuild +script and downloaded source archive- as: `PYTHON=yes PYTHON3=no +./ViennaRNA.SlackBuild`) There is also a set of programs for analyzing sequence and distance -data using split decomposition, statistical geometry, and cluster methods. -They are not maintained any more and not built by default. +data using split decomposition, statistical geometry, and cluster +methods. They are not maintained any more and not built by default. -The code very rarely uses static arrays, and all programs should work for -sequences up to a length of 32,700 (if you have huge amounts of memory that -is). +The code very rarely uses static arrays, and all programs should work +for sequences up to a length of 32,700 (if you have huge amounts of +memory that is). For further info see: |