diff options
| author | Rob van Nues <sborg63@disroot.org> | 2019-05-17 23:13:01 +0700 |
|---|---|---|
| committer | Willy Sudiarto Raharjo <willysr@slackbuilds.org> | 2019-05-17 23:13:01 +0700 |
| commit | 29cf363ff5fdc41f630e27fca0917dc8ae847cc1 (patch) | |
| tree | ecc2ff49e1bf35748c236842abd07bda5ae1d818 /academic/ViennaRNA/ViennaRNA.SlackBuild | |
| parent | 75706e0d0689b0442905c36c9009adb710887534 (diff) | |
academic/ViennaRNA: Updated for version 2.4.12.
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
Diffstat (limited to 'academic/ViennaRNA/ViennaRNA.SlackBuild')
| -rw-r--r-- | academic/ViennaRNA/ViennaRNA.SlackBuild | 26 |
1 files changed, 16 insertions, 10 deletions
diff --git a/academic/ViennaRNA/ViennaRNA.SlackBuild b/academic/ViennaRNA/ViennaRNA.SlackBuild index 2165d6da28327..9de92bfa6e872 100644 --- a/academic/ViennaRNA/ViennaRNA.SlackBuild +++ b/academic/ViennaRNA/ViennaRNA.SlackBuild @@ -23,7 +23,7 @@ # ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. PRGNAM=ViennaRNA -VERSION=${VERSION:-2.4.11} +VERSION=${VERSION:-2.4.12} BUILD=${BUILD:-1} TAG=${TAG:-_SBo} @@ -68,6 +68,11 @@ find . \ -exec chmod 755 {} \; -o \ \( -perm 666 -o -perm 664 -o -perm 600 -o -perm 444 -o -perm 440 -o -perm 400 \) \ -exec chmod 644 {} \; + +patch -p 1 < $CWD/swig4.patch + +#needed to make patches compile +autoreconf # You can configure some ViennaRNA features that are (not) compiled by default. # See the README.md for details. You can enable/disable a these features by @@ -95,19 +100,20 @@ find . \ # - SVM Z-score filter in RNALfold # - GNU Scientific Library for RNApvmin -cluster="" ; [ "${CLUS:-no}" != "no" ] && cluster="--with-cluster" -kinwalker="" ; [ "${KINW:-no}" != "no" ] && kinwalker="--with-kinwalker" -forester="" ; [ "${FORE:-yes}" != "yes" ] && forester="--without-forester" -kinfold="" ; [ "${KINF:-yes}" != "yes" ] && kinwalk="--without-kinfold" -rnalocmin="" ; [ "${RLOC:-yes}" != "yes" ] && rnalocmin="--without-rnalocmin" +cluster="" ; [ "${CLUSTER:-yes}" != "no" ] && cluster="--with-cluster" +kinwalker="" ; [ "${KINWALKER:-yes}" != "no" ] && kinwalker="--with-kinwalker" +# Default enabled features: +forester="" ; [ "${FORESTER:-yes}" != "yes" ] && forester="--without-forester" +kinfold="" ; [ "${KINFOLD:-yes}" != "yes" ] && kinwalk="--without-kinfold" +rnalocmin="" ; [ "${RNALOCMIN:-yes}" != "yes" ] && rnalocmin="--without-rnalocmin" perl="" ; [ "${PERL:-yes}" != "yes" ] && perl="--without-perl" -python="" ; [ "${PYTH:-yes}" != "yes" ] && python="--without-python" -python3="" ; [ "${PYT3:-yes}" != "yes" ] && python3="--without-python3" +python="" ; [ "${PYTHON:-yes}" != "yes" ] && python="--without-python" +python3="" ; [ "${PYTHON3:-yes}" != "yes" ] && python3="--without-python3" swig="" ; [ "${SWIG:-yes}" != "yes" ] && swig="--without-swig" simd="" ; [ "${SIMD:-yes}" != "yes" ] && simd="--disable-simd" lto="" ; [ "${LTO:-yes}" != "yes" ] && lto="--disable-lto" -openmp="" ; [ "${OMP:-yes}" != "yes" ] && openmp="--disable-openmp" -pthreads="" ; [ "${PTHR:-yes}" != "yes" ] && pthreads="--disable-pthreads" +openmp="" ; [ "${OPENMP:-yes}" != "yes" ] && openmp="--disable-openmp" +pthreads="" ; [ "${PTHREADS:-yes}" != "yes" ] && pthreads="--disable-pthreads" svm="" ; [ "${SVM:-yes}" != "yes" ] && svm="--without-svm" gsl="" ; [ "${GSL:-yes}" != "yes" ] && gsl="--without-gsl" |