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| author | Petar Petrov <slackalaxy@gmail.com> | 2018-06-19 23:35:56 +0100 |
|---|---|---|
| committer | Willy Sudiarto Raharjo <willysr@slackbuilds.org> | 2018-06-23 08:44:00 +0700 |
| commit | 552e8af4324cff571dd6ef7b2bc60d3e85082d23 (patch) | |
| tree | 8a9bec714bd6c5d56c64eb18b398db6b0fba8a39 /academic/TreeGraph/README | |
| parent | 548fd1f483f6a72fcabbad54442bf323154869d3 (diff) | |
academic/TreeGraph: Added (A feature rich phylogenetic tree editor).
Signed-off-by: David Spencer <idlemoor@slackbuilds.org>
Diffstat (limited to 'academic/TreeGraph/README')
| -rw-r--r-- | academic/TreeGraph/README | 41 |
1 files changed, 41 insertions, 0 deletions
diff --git a/academic/TreeGraph/README b/academic/TreeGraph/README new file mode 100644 index 0000000000000..9377b9be736d7 --- /dev/null +++ b/academic/TreeGraph/README @@ -0,0 +1,41 @@ +TreeGraph (2): A feature rich and easy to use phylogenetic tree editor + +TreeGraph (2) is a is graphical editor for phylogenetic trees, which +allows to apply various of graphical formats and edit operations and +supports several (visible or invisible) annotations attached to nodes +or branches. Data can be imported from many tree formats, tables and +BayesTraits output. + +A key feature is the interactive comparison and combination of +alternative topologies from different analyses. + +Key features +- Read trees in Newick, Nexus format (including annotations in hot + comments), NeXML or PhyloXML +- Import annotations from text files or combine information from + different phylogenetic analyses +- An unlimited number of numerical or textual annotations on every + branch +- Export trees to various vector and (anti-aliased) pixel graphic + formats (e.g. PDF, SVG, EMF or PNG) +- Many global and element specific formats like line width or color + and text formats +- Versatile editing and formatting options, such as automatically + setting branch widths or colors according to the value of any + attached data +- Editing operations like rerooting, ladderizing or moving and + collapsing nodes or copying or manually creating whole clades +- Generate commands and import data for ancestral state reconstruction + +Citation +TreeGraph 2 has been published in BMC Bioinformatics: +Stöver BC, Müller KF: TreeGraph 2: Combining and visualizing evidence +from different phylogenetic analyses. BMC Bioinformatics 2010, 11:7 +DOI: 10.1186/1471-2105-11-7 + + +IMPORTANT NOTE ABOUT THE DOWNLOAD + +If you have trouble with the download, please use a browser to visit +the TreeGraph download page at http://treegraph.bioinfweb.info/Download +and click the download link. |