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authorPetar Petrov <slackalaxy@gmail.com>2018-06-19 23:35:56 +0100
committerWilly Sudiarto Raharjo <willysr@slackbuilds.org>2018-06-23 08:44:00 +0700
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parent548fd1f483f6a72fcabbad54442bf323154869d3 (diff)
academic/TreeGraph: Added (A feature rich phylogenetic tree editor).
Signed-off-by: David Spencer <idlemoor@slackbuilds.org>
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+TreeGraph (2): A feature rich and easy to use phylogenetic tree editor
+
+TreeGraph (2) is a is graphical editor for phylogenetic trees, which
+allows to apply various of graphical formats and edit operations and
+supports several (visible or invisible) annotations attached to nodes
+or branches. Data can be imported from many tree formats, tables and
+BayesTraits output.
+
+A key feature is the interactive comparison and combination of
+alternative topologies from different analyses.
+
+Key features
+- Read trees in Newick, Nexus format (including annotations in hot
+ comments), NeXML or PhyloXML
+- Import annotations from text files or combine information from
+ different phylogenetic analyses
+- An unlimited number of numerical or textual annotations on every
+ branch
+- Export trees to various vector and (anti-aliased) pixel graphic
+ formats (e.g. PDF, SVG, EMF or PNG)
+- Many global and element specific formats like line width or color
+ and text formats
+- Versatile editing and formatting options, such as automatically
+ setting branch widths or colors according to the value of any
+ attached data
+- Editing operations like rerooting, ladderizing or moving and
+ collapsing nodes or copying or manually creating whole clades
+- Generate commands and import data for ancestral state reconstruction
+
+Citation
+TreeGraph 2 has been published in BMC Bioinformatics:
+Stöver BC, Müller KF: TreeGraph 2: Combining and visualizing evidence
+from different phylogenetic analyses. BMC Bioinformatics 2010, 11:7
+DOI: 10.1186/1471-2105-11-7
+
+
+IMPORTANT NOTE ABOUT THE DOWNLOAD
+
+If you have trouble with the download, please use a browser to visit
+the TreeGraph download page at http://treegraph.bioinfweb.info/Download
+and click the download link.