diff options
| author | Petar Petrov <slackalaxy@gmail.com> | 2020-09-15 08:26:50 +0700 |
|---|---|---|
| committer | Willy Sudiarto Raharjo <willysr@slackbuilds.org> | 2020-09-15 08:26:50 +0700 |
| commit | 789435221bf74332c4b3a54f50e170845bb97ec6 (patch) | |
| tree | b26a098cd00d06c057ac4add2f2482ecdbbe047b /academic/PhyML | |
| parent | e8ca977a323bf506083d2bcda48079b6534742e5 (diff) | |
academic/PhyMLR: Updated for version 3.3.20200621.
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
Diffstat (limited to 'academic/PhyML')
| -rw-r--r-- | academic/PhyML/PhyML.SlackBuild | 12 | ||||
| -rw-r--r-- | academic/PhyML/PhyML.info | 6 |
2 files changed, 10 insertions, 8 deletions
diff --git a/academic/PhyML/PhyML.SlackBuild b/academic/PhyML/PhyML.SlackBuild index bddb063c007b..893454e123e5 100644 --- a/academic/PhyML/PhyML.SlackBuild +++ b/academic/PhyML/PhyML.SlackBuild @@ -25,7 +25,7 @@ # Thanks to Niels Horn for some handy modifications and corrections. PRGNAM=PhyML -VERSION=${VERSION:-3.3.20190909} +VERSION=${VERSION:-3.3.20200621} BUILD=${BUILD:-1} TAG=${TAG:-_SBo} @@ -89,7 +89,9 @@ find -L . \ # Use our CFLAGS sed -i "/^CFLAGS/s/=/+=/" Makefile src/Makefile -CFLAGS="$SLKCFLAGS" CXXFLAGS="$SLKCFLAGS" make +# The -mfma flag is needed for building on 14.2. Help is from here: +# https://github.com/horovod/horovod/issues/1832 +CFLAGS="$SLKCFLAGS -mfma" CXXFLAGS="$SLKCFLAGS -mfma" make make install DESTDIR=$PKG # This is PhyML MPI. If you do not want it, comment the lines below. Then you do @@ -108,7 +110,7 @@ make install DESTDIR=$PKG # Use our CFLAGS sed -i "/^CFLAGS/s/=/+=/" Makefile src/Makefile -CFLAGS="$SLKCFLAGS" CXXFLAGS="$SLKCFLAGS" make +CFLAGS="$SLKCFLAGS -mfma" CXXFLAGS="$SLKCFLAGS -mfma" make make install DESTDIR=$PKG # This is Phyrex @@ -126,7 +128,7 @@ make install DESTDIR=$PKG # Use our CFLAGS sed -i "/^CFLAGS/s/=/+=/" Makefile src/Makefile -CFLAGS="$SLKCFLAGS" CXXFLAGS="$SLKCFLAGS" make +CFLAGS="$SLKCFLAGS -mfma" CXXFLAGS="$SLKCFLAGS -mfma" make make install DESTDIR=$PKG # This is PhyTime @@ -144,7 +146,7 @@ make install DESTDIR=$PKG # Use our CFLAGS sed -i "/^CFLAGS/s/=/+=/" Makefile src/Makefile -CFLAGS="$SLKCFLAGS" CXXFLAGS="$SLKCFLAGS" make +CFLAGS="$SLKCFLAGS -mfma" CXXFLAGS="$SLKCFLAGS -mfma" make make install DESTDIR=$PKG find $PKG -print0 | xargs -0 file | grep -e "executable" -e "shared object" | grep ELF \ diff --git a/academic/PhyML/PhyML.info b/academic/PhyML/PhyML.info index f44eaca3deec..ec04310e993c 100644 --- a/academic/PhyML/PhyML.info +++ b/academic/PhyML/PhyML.info @@ -1,8 +1,8 @@ PRGNAM="PhyML" -VERSION="3.3.20190909" +VERSION="3.3.20200621" HOMEPAGE="https://github.com/stephaneguindon/phyml/" -DOWNLOAD="https://github.com/stephaneguindon/phyml/archive/v3.3.20190909/phyml-3.3.20190909.tar.gz" -MD5SUM="35698ff61c1db57b238f5b2d2cc784b3" +DOWNLOAD="https://github.com/stephaneguindon/phyml/archive/v3.3.20200621/phyml-3.3.20200621.tar.gz" +MD5SUM="12622e111c388bcb16696660033143b5" DOWNLOAD_x86_64="" MD5SUM_x86_64="" REQUIRES="openmpi" |