academic/PhyML: Updated for version 20120412.

Signed-off-by: dsomero <xgizzmo@slackbuilds.org>

1 files changed, 12 insertions, 12 deletions

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-PhyML is a software that estimates maximum likelihood phylogenies 
-from alignments of nucleotide or amino acid sequences. It provides a 
-wide range of options that were designed to facilitate standard 
-phylogenetic analyses. The main strengths of PhyML lies in the large 
-number of substitution models coupled to various options to search 
-the space of phylogenetic tree topologies, going from very fast and 
-efficient methods to slower but generally more accurate approaches. 
-It also implements two methods to evaluate branch supports in a sound 
-statistical framework (the non-parametric bootstrap and the 
+PhyML is a software that estimates maximum likelihood phylogenies
+from alignments of nucleotide or amino acid sequences. It provides a
+wide range of options that were designed to facilitate standard
+phylogenetic analyses. The main strengths of PhyML lies in the large
+number of substitution models coupled to various options to search
+the space of phylogenetic tree topologies, going from very fast and
+efficient methods to slower but generally more accurate approaches.
+It also implements two methods to evaluate branch supports in a sound
+statistical framework (the non-parametric bootstrap and the
 approximate likelihood ratio test).
 
 For details and citation
-New Algorithms and Methods to Estimate Maximum-Likelihood 
-Phylogenies: Assessing the Performance of PhyML 3.0. Guindon S., 
-Dufayard J.F., Lefort V., Anisimova M., Hordijk W., Gascuel O. 
+New Algorithms and Methods to Estimate Maximum-Likelihood
+Phylogenies: Assessing the Performance of PhyML 3.0. Guindon S.,
+Dufayard J.F., Lefort V., Anisimova M., Hordijk W., Gascuel O.
 Systematic Biology, 59(3):307-21, 2010.