academic/FCSalyzer: Added (Flow cytometry analyser).

Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>

7 files changed, 121 insertions, 0 deletions

diff --git a/academic/FCSalyzer/FCSalyzer.SlackBuild b/academic/FCSalyzer/FCSalyzer.SlackBuild
new file mode 100644
index 000000000000..e847a3cc945d
--- /dev/null
+++ b/academic/FCSalyzer/FCSalyzer.SlackBuild
@@ -0,0 +1,72 @@
+#!/bin/sh
+
+# Slackware build script for FCSalyzer
+
+# Copyright 2017 Petar Petrov slackalaxy@gmail.com
+# All rights reserved.
+#
+# Redistribution and use of this script, with or without modification, is
+# permitted provided that the following conditions are met:
+#
+# 1. Redistributions of this script must retain the above copyright
+#    notice, this list of conditions and the following disclaimer.
+#
+#  THIS SOFTWARE IS PROVIDED BY THE AUTHOR "AS IS" AND ANY EXPRESS OR IMPLIED
+#  WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF
+#  MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED.  IN NO
+#  EVENT SHALL THE AUTHOR BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,
+#  SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
+#  PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS;
+#  OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
+#  WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR
+#  OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF
+#  ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
+
+PRGNAM=FCSalyzer
+VERSION=${VERSION:-0.9.11_alpha}
+BUILD=${BUILD:-1}
+TAG=${TAG:-_SBo}
+
+ARCH=noarch
+SRCVER=0.9.11-alpha
+
+CWD=$(pwd)
+TMP=${TMP:-/tmp/SBo}
+PKG=$TMP/package-$PRGNAM
+OUTPUT=${OUTPUT:-/tmp}
+
+set -e
+
+rm -rf $PKG
+mkdir -p $TMP $PKG $OUTPUT
+cd $TMP
+rm -rf $PRGNAM-$VERSION
+mkdir $PRGNAM-$VERSION
+cd $PRGNAM-$VERSION
+unzip $CWD/${PRGNAM}\ ${SRCVER}.zip
+
+chown -R root:root .
+find -L . \
+ \( -perm 777 -o -perm 775 -o -perm 750 -o -perm 711 -o -perm 555 \
+  -o -perm 511 \) -exec chmod 755 {} \; -o \
+ \( -perm 666 -o -perm 664 -o -perm 640 -o -perm 600 -o -perm 444 \
+  -o -perm 440 -o -perm 400 \) -exec chmod 644 {} \;
+
+install -D -m755 $PRGNAM.jar $PKG/usr/bin/$PRGNAM.jar
+
+mkdir -p $PKG/usr/doc/$PRGNAM-$VERSION
+cp -a \
+  Datafiles.txt License.txt package.html Readme.txt \
+  $PKG/usr/doc/$PRGNAM-$VERSION
+cat $CWD/$PRGNAM.SlackBuild > $PKG/usr/doc/$PRGNAM-$VERSION/$PRGNAM.SlackBuild
+
+mkdir -p $PKG/usr/share/{applications,pixmaps}
+cp $CWD/$PRGNAM.desktop $PKG/usr/share/applications
+cp $CWD/$PRGNAM.png $PKG/usr/share/pixmaps
+
+mkdir -p $PKG/install
+cat $CWD/slack-desc > $PKG/install/slack-desc
+cat $CWD/doinst.sh > $PKG/install/doinst.sh
+
+cd $PKG
+/sbin/makepkg -l y -c n $OUTPUT/$PRGNAM-$VERSION-$ARCH-$BUILD$TAG.${PKGTYPE:-tgz}
diff --git a/academic/FCSalyzer/FCSalyzer.desktop b/academic/FCSalyzer/FCSalyzer.desktop
new file mode 100644
index 000000000000..0ac9a11783cb
--- /dev/null
+++ b/academic/FCSalyzer/FCSalyzer.desktop
@@ -0,0 +1,7 @@
+[Desktop Entry]
+Type=Application
+Exec=java -jar /usr/bin/FCSalyzer.jar
+Terminal=false
+Name=Flow cytometry FCSalyzer
+Icon=FCSalyzer.png
+Categories=Education;
diff --git a/academic/FCSalyzer/FCSalyzer.info b/academic/FCSalyzer/FCSalyzer.info
new file mode 100644
index 000000000000..1010408e2333
--- /dev/null
+++ b/academic/FCSalyzer/FCSalyzer.info
@@ -0,0 +1,10 @@
+PRGNAM="FCSalyzer"
+VERSION="0.9.11_alpha"
+HOMEPAGE="https://sourceforge.net/projects/fcsalyzer/"
+DOWNLOAD="https://sourceforge.net/projects/fcsalyzer/files/Version%200.9.11-alpha/FCSalyzer%200.9.11-alpha.zip"
+MD5SUM="7b2b3ce7e92f7e2f9e1e050f5aedc0ba"
+DOWNLOAD_x86_64=""
+MD5SUM_x86_64=""
+REQUIRES="jdk"
+MAINTAINER="Petar Petrov"
+EMAIL="slackalaxy@gmail.com"
diff --git a/academic/FCSalyzer/FCSalyzer.png b/academic/FCSalyzer/FCSalyzer.png
new file mode 100644
index 000000000000..3700c87c2f36
--- /dev/null
+++ b/academic/FCSalyzer/FCSalyzer.png
diff --git a/academic/FCSalyzer/README b/academic/FCSalyzer/README
new file mode 100644
index 000000000000..3453857402df
--- /dev/null
+++ b/academic/FCSalyzer/README
@@ -0,0 +1,10 @@
+FCSalyzer: a free program for analysing flow cytometry data.
+ 
+FCSalyzer is a simple application for analysing flow cytometry data. It is
+based on the "What you see is what you get" principle with the hope of
+being intuitive to use. For more information, please visit the project web-
+page.
+
+Supported datafiles (depending on the type of flow cytometer and
+acquisition software) are listed in "datafiles.txt", found in the
+documentation folder of the created package.
diff --git a/academic/FCSalyzer/doinst.sh b/academic/FCSalyzer/doinst.sh
new file mode 100644
index 000000000000..5fb28930db0b
--- /dev/null
+++ b/academic/FCSalyzer/doinst.sh
@@ -0,0 +1,3 @@
+if [ -x /usr/bin/update-desktop-database ]; then
+  /usr/bin/update-desktop-database -q usr/share/applications >/dev/null 2>&1
+fi
diff --git a/academic/FCSalyzer/slack-desc b/academic/FCSalyzer/slack-desc
new file mode 100644
index 000000000000..8629037721cd
--- /dev/null
+++ b/academic/FCSalyzer/slack-desc
@@ -0,0 +1,19 @@
+# HOW TO EDIT THIS FILE:
+# The "handy ruler" below makes it easier to edit a package description.
+# Line up the first '|' above the ':' following the base package name, and
+# the '|' on the right side marks the last column you can put a character in.
+# You must make exactly 11 lines for the formatting to be correct.  It's also
+# customary to leave one space after the ':' except on otherwise blank lines.
+
+         |-----handy-ruler------------------------------------------------------|
+FCSalyzer: FCSalyzer (Flow cytometry analyser)
+FCSalyzer:
+FCSalyzer: FCSalyzer is a simple application for analysing flow cytometry
+FCSalyzer: data. It is based on the "What you see is what you get" principle.
+FCSalyzer:
+FCSalyzer: Home: http://sourceforge.net/projects/FCSalyzer
+FCSalyzer:
+FCSalyzer:
+FCSalyzer:
+FCSalyzer:
+FCSalyzer: