academic/EMBASSY: Added (EMBOSS associated software)

Signed-off-by: Niels Horn <niels.horn@slackbuilds.org>

1 files changed, 94 insertions, 0 deletions

diff --git a/academic/EMBASSY/CONTENTS b/academic/EMBASSY/CONTENTS
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+The EMBASSY package includes the following:
+-------------------------------------------
+
+DOMAINATRIX Previous distributions of the protein domain programs from
+Jon Ison's group were in a single EMBASSY package. This is now split
+into 5 packages according to function.
+
+Application details and documentation for DOMAINATRIX
+
+DOMAINATRIX is available as a Beta release 0.1.0 from our FTP server
+ftp://emboss.open-bio.org/pub/EMBOSS/ in file DOMAINATRIX-0.1.0.tar.gz
+
+Application details and documentation for DOMALIGN
+
+DOMALIGN is available as a Beta release 0.1.0 from our FTP server
+ftp://emboss.open-bio.org/pub/EMBOSS/ in file DOMALIGN-0.1.0.tar.gz
+
+Application details and documentation for DOMSEARCH
+
+DOMSEARCH is available as a Beta release 0.1.0 from our FTP server
+ftp://emboss.open-bio.org/pub/EMBOSS/ in file DOMSEARCH-0.1.0.tar.gz
+
+Application details and documentation for SIGNATURE
+
+SIGNATURE is available as a Beta release 0.1.0 from our FTP server
+ftp://emboss.open-bio.org/pub/EMBOSS/ in file SIGNATURE-0.1.0.tar.gz
+
+Application details and documentation for STRUCTURE
+
+STRUCTURE is available as a Beta release 0.1.0 from our FTP server
+ftp://emboss.open-bio.org/pub/EMBOSS/ in file STRUCTURE-0.1.0.tar.gz EMNU
+(EMBOSS Menu is Not UNIX) Application details and documentation for EMNU
+
+EMNU is available as release 1.05 from our FTP server
+ftp://emboss.open-bio.org/pub/EMBOSS/ in file EMNU-1.05.tar.gz ESIM4
+(EMBOSS version of SIM4) Application details and documentation for ESIM4
+
+ESIM4 is available as release 1.0.0 from our FTP server
+ftp://emboss.open-bio.org/pub/EMBOSS/ in file ESIM4-1.0.0.tar.gz HMMER
+(EMBOSS version of HMMER 2.1.1 - PLEASE USE HMMERNEW) Application details
+and documentation for HMMER
+
+HMMER is available as release 2.1.1 from our FTP server
+ftp://emboss.open-bio.org/pub/EMBOSS/ in file HMMER-2.1.1.tar.gz HMMERNEW
+(EMBOSS version of HMMER 2.3.2) Application details and documentation
+for HMMERNEW
+
+HMMER 2.3.2 is available from our FTP server
+ftp://emboss.open-bio.org/pub/EMBOSS/ in file HMMER-2.3.2.tar.gz
+MEME (previous EMBOSS version of MEME 2.3.1) Application details and
+documentation for MEME
+
+MEME is available as release 2.3.1 from our FTP server
+ftp://emboss.open-bio.org/pub/EMBOSS/ in file MEME-2.3.1.tar.gz MEMENEW
+(EMBOSS version of MEME 3.0.14) Application details and documentation
+for MEMENEW which wraps release 3.0.14 of the Meme package
+
+MEMENEW is available as release 0.1.0 from our FTP server
+ftp://emboss.open-bio.org/pub/EMBOSS/ in file MEMENEW-0.1.0.tar.gz
+MSE (A Multiple Sequence Screen Editor for Biological Sequences.)
+Application details and documentation for MSE
+
+MSE is available as release 1.0.0 from our FTP server
+ftp://emboss.open-bio.org/pub/EMBOSS/ in file MSE-1.0.0.tar.gz MYEMBOSS
+(For sites to build their own applications) Application details and
+documentation for MYEMBOSS
+
+MYEMBOSS provides a directory structure and makefile stubs for developing
+your own applications more easily than in versions before 3.0.0.
+
+MYEMBOSS requires autoconf, automake and libtool to be installed. See
+the INSTALL file for more informations.
+
+MYEMBOSS is available as release 1.0.0 from our FTP server
+ftp://emboss.open-bio.org/pub/EMBOSS/ in file MYEMBOSS-1.0.0.tar.gz PHYLIP
+(Phylogeny Inference Package) Application details and documentation for
+PHYLIP and PHYLIPNEW.
+
+PHYLIP 3.572 was available as an EMBASSY package with previous
+releases. From 3.0.0 we are including a beta test conversion of PHYLIP
+3.61 (PHYLIPNEW). Program names now begin with 'f' rather than 'e'
+and interfaces are more EMBOSS-like. Please pass on feedback to our bug
+reporting list emboss-bug@emboss.open-bio.org
+
+PHYLIPNEW is available as a Beta release 3.6b from our FTP server
+ftp://emboss.open-bio.org/pub/EMBOSS/ in file PHYLIP-3.6b.tar.gz TOPO
+(Transmembrane display) Application details and documentation for TOPO
+
+TOPO is available as release 1.0.0 from our FTP server
+ftp://emboss.open-bio.org/pub/EMBOSS/ in file TOPO-1.0.0.tar.gz Vienna
+RNA package Application details and documentation for VIENNA
+
+Vienna is available as release 1.6 from our FTP server
+ftp://emboss.open-bio.org/pub/EMBOSS/ in file VIENNA-1.6.tar.gz