diff options
| author | Petar Petrov <petar.petrov@student.oulu.fi> | 2014-09-29 13:35:06 +0700 |
|---|---|---|
| committer | Willy Sudiarto Raharjo <willysr@slackbuilds.org> | 2014-10-03 10:16:50 +0700 |
| commit | c8eed62852a3df873fee87de5693eafcaf98d305 (patch) | |
| tree | 4d2d7a52569868ef72b30cc4797e4a067af3267a | |
| parent | e13ee46d9ccccd80c3bb6cc9d74952551caa27f9 (diff) | |
academic/paml: Updated for version 4.8a.
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
| -rw-r--r-- | academic/paml/README | 1 | ||||
| -rw-r--r-- | academic/paml/paml.SlackBuild | 8 | ||||
| -rw-r--r-- | academic/paml/paml.info | 6 | ||||
| -rw-r--r-- | academic/paml/slack-desc | 2 |
4 files changed, 9 insertions, 8 deletions
diff --git a/academic/paml/README b/academic/paml/README index 5703a8d4d07fc..6cabb5135e0a6 100644 --- a/academic/paml/README +++ b/academic/paml/README @@ -10,7 +10,6 @@ Notes about running of PAML programs and the package: - Example datasets are included in /usr/share/paml/examples - Control files for PAML programs are in /usr/share/paml -- Dcumentation can be found in /usr/doc/paml-$VERSION - Additional executables are placed in /usr/libexec/paml Suggested citation: diff --git a/academic/paml/paml.SlackBuild b/academic/paml/paml.SlackBuild index c0c62ef3e253b..5c3bc898477ef 100644 --- a/academic/paml/paml.SlackBuild +++ b/academic/paml/paml.SlackBuild @@ -23,7 +23,7 @@ # ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. PRGNAM=paml -VERSION=${VERSION:-4.8} +VERSION=${VERSION:-4.8a} BUILD=${BUILD:-1} TAG=${TAG:-_SBo} @@ -35,6 +35,8 @@ if [ -z "$ARCH" ]; then esac fi +MAINVER=4.8 + CWD=$(pwd) TMP=${TMP:-/tmp/SBo} PKG=$TMP/package-$PRGNAM @@ -61,7 +63,7 @@ mkdir -p $TMP $PKG $OUTPUT cd $TMP rm -rf ${PRGNAM}${VERSION} tar xvf $CWD/${PRGNAM}${VERSION}.tgz -cd ${PRGNAM}${VERSION} +cd ${PRGNAM}${MAINVER} chown -R root:root . find -L . \ \( -perm 777 -o -perm 775 -o -perm 750 -o -perm 711 -o -perm 555 \ @@ -122,7 +124,7 @@ cd .. cc -o multiruns $SLKCFLAGS multiruns.c -lm install -D -m755 multiruns $PKG/usr/libexec/$PRGNAM/multiruns -cd $TMP/${PRGNAM}${VERSION} +cd $TMP/${PRGNAM}${MAINVER} # Include sample system files and example experimental data. mkdir -p $PKG/usr/share/$PRGNAM/{aa,codon,ctl,dat,nuc,paup,trees} diff --git a/academic/paml/paml.info b/academic/paml/paml.info index 1362f9599a7d5..cea138f17eb11 100644 --- a/academic/paml/paml.info +++ b/academic/paml/paml.info @@ -1,9 +1,9 @@ PRGNAM="paml" -VERSION="4.8" +VERSION="4.8a" HOMEPAGE="http://abacus.gene.ucl.ac.uk/software/paml.html" -DOWNLOAD="http://abacus.gene.ucl.ac.uk/software/paml4.8.tgz \ +DOWNLOAD="http://abacus.gene.ucl.ac.uk/software/paml4.8a.tgz \ http://abacus.gene.ucl.ac.uk/software/MCMCtree.Tutorials.pdf" -MD5SUM="b99f10ba64da7889f35b68a3dfc99daf \ +MD5SUM="1da1f6c3861b45451cf130961d4bd3e3 \ 29c851d887eea56b949c01ab42cc48fb" DOWNLOAD_x86_64="" MD5SUM_x86_64="" diff --git a/academic/paml/slack-desc b/academic/paml/slack-desc index 3d3aeb22d8936..1ec5546349c8e 100644 --- a/academic/paml/slack-desc +++ b/academic/paml/slack-desc @@ -16,4 +16,4 @@ paml: reconstructed trees using other programs such as PAUP*, PHYLIP, paml: MOLPHY, PhyML, RaxML, etc. paml: paml: Home: http://abacus.gene.ucl.ac.uk/software/paml.html -paml: References: /usr/doc/paml-4.8/References +paml: References: /usr/doc/paml-4.8a/References |