diff options
| author | Petar Petrov <slackalaxy@gmail.com> | 2019-08-03 07:05:50 +0700 |
|---|---|---|
| committer | Willy Sudiarto Raharjo <willysr@slackbuilds.org> | 2019-08-03 07:05:50 +0700 |
| commit | 1849f02ee554a85d11a3305231c46ff903d91520 (patch) | |
| tree | d25220405450d43e634b99245d6c22ad52056a77 | |
| parent | d22bf7ca235dd4dfe6f8a4aa639c2f3ab77505e0 (diff) | |
academic/mrbayes: Updated for version 3.2.7a.
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
| -rw-r--r-- | academic/mrbayes/mrbayes.SlackBuild | 45 | ||||
| -rw-r--r-- | academic/mrbayes/mrbayes.info | 6 |
2 files changed, 28 insertions, 23 deletions
diff --git a/academic/mrbayes/mrbayes.SlackBuild b/academic/mrbayes/mrbayes.SlackBuild index 5154bdee2432..2bf1289cb444 100644 --- a/academic/mrbayes/mrbayes.SlackBuild +++ b/academic/mrbayes/mrbayes.SlackBuild @@ -2,7 +2,7 @@ # Slackware build script for mrbayes -# Copyright 2013-2016 Petar Petrov slackalaxy@gmail.com +# Copyright 2013-2019 Petar Petrov slackalaxy@gmail.com # All rights reserved. # # Redistribution and use of this script, with or without modification, is @@ -23,13 +23,14 @@ # ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. PRGNAM=mrbayes -VERSION=${VERSION:-3.2.6} +SRCNAM=MrBayes +VERSION=${VERSION:-3.2.7a} BUILD=${BUILD:-1} TAG=${TAG:-_SBo} if [ -z "$ARCH" ]; then case "$( uname -m )" in - i?86) ARCH=i486 ;; + i?86) ARCH=i586 ;; arm*) ARCH=arm ;; *) ARCH=$( uname -m ) ;; esac @@ -40,8 +41,8 @@ TMP=${TMP:-/tmp/SBo} PKG=$TMP/package-$PRGNAM OUTPUT=${OUTPUT:-/tmp} -if [ "$ARCH" = "i486" ]; then - SLKCFLAGS="-O2 -march=i486 -mtune=i686" +if [ "$ARCH" = "i586" ]; then + SLKCFLAGS="-O2 -march=i586 -mtune=i686" LIBDIRSUFFIX="" elif [ "$ARCH" = "i686" ]; then SLKCFLAGS="-O2 -march=i686 -mtune=i686" @@ -59,9 +60,9 @@ set -e rm -rf $PKG mkdir -p $TMP $PKG $OUTPUT cd $TMP -rm -rf ${PRGNAM}-${VERSION} -tar xvf $CWD/$PRGNAM-$VERSION.tar.gz -cd ${PRGNAM}-${VERSION} +rm -rf ${SRCNAM}-${VERSION} +tar xvf $CWD/$SRCNAM-$VERSION.tar.gz +cd ${SRCNAM}-${VERSION} chown -R root:root . find -L . \ \( -perm 777 -o -perm 775 -o -perm 750 -o -perm 711 -o -perm 555 \ @@ -69,11 +70,6 @@ find -L . \ \( -perm 666 -o -perm 664 -o -perm 640 -o -perm 600 -o -perm 444 \ -o -perm 440 -o -perm 400 \) -exec chmod 644 {} \; -cd src -autoconf - -CFLAGS="$SLKCFLAGS" \ -CXXFLAGS="$SLKCFLAGS" \ ./configure \ --prefix=/usr \ --libdir=/usr/lib${LIBDIRSUFFIX} \ @@ -84,17 +80,26 @@ CXXFLAGS="$SLKCFLAGS" \ --with-beagle=no \ --build=$ARCH-slackware-linux -make -install -D -m755 mb $PKG/usr/bin/$PRGNAM +# Fix the examples path +sed -i "s:/share:/share/$PRGNAM:" examples/Makefile +sed -i 's:examples/${PACKAGE}:examples:g' examples/Makefile + +# Use our CFLAGS +sed -i "/^CFLAGS/s/=/+=/" Makefile + +make CFLAGS="$SLKCFLAGS" +make install DESTDIR=$PKG + +# Rename the executable +cd $PKG/usr/bin +mv mb $PRGNAM +cd - find $PKG -print0 | xargs -0 file | grep -e "executable" -e "shared object" | grep ELF \ | cut -f 1 -d : | xargs strip --strip-unneeded 2> /dev/null || true -mkdir -p $PKG/usr/share/$PRGNAM -cp -a ../examples $PKG/usr/share/$PRGNAM - -mkdir -p $PKG/usr/doc/$PRGNAM-$VERSION -cp -a gpl.txt ../documentation/* $PKG/usr/doc/$PRGNAM-$VERSION +# Add these too to the doc folder +cp -a INSTALL TODO $PKG/usr/doc/$PRGNAM-$VERSION cat $CWD/$PRGNAM.SlackBuild > $PKG/usr/doc/$PRGNAM-$VERSION/$PRGNAM.SlackBuild cat $CWD/References > $PKG/usr/doc/$PRGNAM-$VERSION/References diff --git a/academic/mrbayes/mrbayes.info b/academic/mrbayes/mrbayes.info index 547aa093982d..f00c0fc95f81 100644 --- a/academic/mrbayes/mrbayes.info +++ b/academic/mrbayes/mrbayes.info @@ -1,8 +1,8 @@ PRGNAM="mrbayes" -VERSION="3.2.6" +VERSION="3.2.7a" HOMEPAGE="http://mrbayes.sourceforge.net/" -DOWNLOAD="http://ponce.cc/slackware/sources/repo/mrbayes-3.2.6.tar.gz" -MD5SUM="95f9822f24be47b976bf87540b55d1fe" +DOWNLOAD="https://github.com/NBISweden/MrBayes/archive/v3.2.7a/MrBayes-3.2.7a.tar.gz" +MD5SUM="504236626ce9a2de1066a8520672f0cc" DOWNLOAD_x86_64="" MD5SUM_x86_64="" REQUIRES="" |