GOMo Databases (updated 17 Feb 2015) to be used with MEME Suite:

Single Species
Danio rerio (Zebrafish)
Drosophila Melanogaster (Fruit fly)
Gallus Gallus (Chicken)
Rattus norvegicus (Rat)
Schizosaccharomyces pombe

Multiple Species
Arabidopsis thaliana (Plant)

Comparative Species
Oryza sativa (Rice)
Populus trichocarpa (Poplar)
Sorghum brachupodium
Brachypodium distachyon (purple false brome)
E.coli K12
E.coli CTF073
Salmonella enterica serovar Typhi Ty2
Yersinia pestis CO92
Homo sapiens (Human)
Mus musculus (Mouse)
Canis familiaris (Dog)
Equus caballus (Horse)
Mus musculus (Mouse)
Canis familiaris (Dog)
Rattus Norvegicus (Rat)
Equus caballus (Horse)
Homo sapiens (Human)
Saccharomyces cerevisiae (yeast)
S. bayanus
S. mikatae
S. paradoxus

Note!
The unarchived size of this is ~378 MB