#!/bin/sh # Slackware build script for clustalx # Written by Petar Petrov, <ppetrov@paju.oulu.fi> and # hereby submitted to the public domain # Based on the clustalx PKGBUILD from Archlinux AUR # (http://aur.archlinux.org/packages.php?ID=25080). # PKGBUILD submitter is mickelliot and maintainer is # machoo02. Thank you! # THIS SLACKBUILD IS DISTRIBUTETD IN THE HOPE OF BEING # USEFUL BUT WITHOUT ANY WARRANTY. THE AUTHOR IS _NOT_ # RESPONSIBLE FOR ANY DAMAGE OR DATA LOSS CAUSED BY IT. PRGNAM=clustalx VERSION=${VERSION:-2.1} BUILD=${BUILD:-1} TAG=${TAG:-_SBo} if [ -z "$ARCH" ]; then case "$( uname -m )" in i?86) export ARCH=i486 ;; arm*) export ARCH=arm ;; *) export ARCH=$( uname -m ) ;; esac fi CWD=$(pwd) TMP=${TMP:-/tmp/SBo} PKG=$TMP/package-$PRGNAM OUTPUT=${OUTPUT:-/tmp} if [ "$ARCH" = "i486" ]; then SLKCFLAGS="-O2 -march=i486 -mtune=i686" LIBDIRSUFFIX="" elif [ "$ARCH" = "i686" ]; then SLKCFLAGS="-O2 -march=i686 -mtune=i686" LIBDIRSUFFIX="" elif [ "$ARCH" = "x86_64" ]; then SLKCFLAGS="-O2 -fPIC" LIBDIRSUFFIX="64" else SLKCFLAGS="-O2" LIBDIRSUFFIX="" fi set -e rm -rf $PKG mkdir -p $TMP $PKG $OUTPUT cd $TMP rm -rf $PRGNAM-$VERSION tar xvf $CWD/$PRGNAM-$VERSION.tar.gz cd $PRGNAM-$VERSION # The patch is from Archlinux AUR, as mentioned above. patch -p1 < $CWD/fix-static.patch chown -R root:root . find . \ \( -perm 777 -o -perm 775 -o -perm 711 -o -perm 555 -o -perm 511 \) \ -exec chmod 755 {} \; -o \ \( -perm 666 -o -perm 664 -o -perm 600 -o -perm 444 -o -perm 440 -o -perm 400 \) \ -exec chmod 644 {} \; sed -i 's/static//g' clustalx.pro qmake #Use our CFLAGS/CXXFLAGS sed -i "/^C.*.*FLAGS/s/=/+=/" Makefile CFLAGS="$SLKCFLAGS" \ CXXFLAGS="$SLKCFLAGS" \ make install -D -m755 clustalx $PKG/usr/bin/clustalx install -D -m644 colprot.xml $PKG/usr/share/$PRGNAM/colprot.xml install -D -m644 coldna.xml $PKG/usr/share/$PRGNAM/coldna.xml install -D -m644 coldna.xml $PKG/usr/share/$PRGNAM/colprint.xml install -D -m644 clustalx.hlp $PKG/usr/share/$PRGNAM/clustalx.hlp find $PKG -print0 | xargs -0 file | grep -e "executable" -e "shared object" | grep ELF \ | cut -f 1 -d : | xargs strip --strip-unneeded 2> /dev/null || true # Menu item and icon mkdir -p $PKG/usr/share/{applications,pixmaps} cp $CWD/clustalx.desktop $PKG/usr/share/applications cp $CWD/clustalx.png $PKG/usr/share/pixmaps mkdir -p $PKG/usr/doc/$PRGNAM-$VERSION cp -a \ README COPYING \ $PKG/usr/doc/$PRGNAM-$VERSION cat $CWD/$PRGNAM.SlackBuild > $PKG/usr/doc/$PRGNAM-$VERSION/$PRGNAM.SlackBuild cat $CWD/References > $PKG/usr/doc/$PRGNAM-$VERSION/References mkdir -p $PKG/install cat $CWD/slack-desc > $PKG/install/slack-desc cat $CWD/doinst.sh > $PKG/install/doinst.sh cd $PKG /sbin/makepkg -l y -c n $OUTPUT/$PRGNAM-$VERSION-$ARCH-$BUILD$TAG.${PKGTYPE:-tgz}