From 08da4a154dfcf2a0b187b0a3a4f467eeb3b3b1e5 Mon Sep 17 00:00:00 2001 From: Petar Petrov Date: Fri, 12 Jan 2018 22:52:20 +0000 Subject: academic/RepeatMasker: Added (Screen DNA sequence). Signed-off-by: David Spencer --- academic/RepeatMasker/README.SLACKWARE | 31 +++++++++++++++++++++++++++++++ 1 file changed, 31 insertions(+) create mode 100644 academic/RepeatMasker/README.SLACKWARE (limited to 'academic/RepeatMasker/README.SLACKWARE') diff --git a/academic/RepeatMasker/README.SLACKWARE b/academic/RepeatMasker/README.SLACKWARE new file mode 100644 index 0000000000..dd3313fd62 --- /dev/null +++ b/academic/RepeatMasker/README.SLACKWARE @@ -0,0 +1,31 @@ +After install go fo /opt/RepeatMasker and run the RepeatMasker +Configuration Program: + +# perl ./configure + +Paths are as follows: + +**PERL PROGRAM** +/usr/bin/perl + +**REPEATMASKER INSTALLATION DIRECTORY** +/opt/RepeatMasker + +**TRF PROGRAM** +/usr/bin/trf + +Add a Search Engine: +1. CrossMatch: you should obtain this yourself, with the proper + license, following the instructions here http://www.phrap.org/ +2. RMBlast - NCBI Blast with RepeatMasker extensions: this is + available from SBo. +3. WUBlast/ABBlast (required by DupMasker): you should obtain this + yourself, with the proper license, following the instructions here + https://blast.advbiocomp.com/licensing/ +4. HMMER3.1 & DFAM: this is available from SBo. + +**RMBlast (rmblastn) INSTALLATION PATH** +/usr/bin + +**HMMER INSTALLATION PATH** +/usr/bin -- cgit v1.2.3