From 7521abef93ae74b764d6fe9dcf7b6edeae96057c Mon Sep 17 00:00:00 2001 From: brobr Date: Fri, 4 Mar 2022 15:14:47 +0000 Subject: academic/pysam: Use internal htslib-1.14 Signed-off-by: Willy Sudiarto Raharjo --- academic/pysam/pysam.SlackBuild | 7 +------ 1 file changed, 1 insertion(+), 6 deletions(-) diff --git a/academic/pysam/pysam.SlackBuild b/academic/pysam/pysam.SlackBuild index 29449fc242767..369da78f83c87 100644 --- a/academic/pysam/pysam.SlackBuild +++ b/academic/pysam/pysam.SlackBuild @@ -26,7 +26,7 @@ cd $(dirname $0) ; CWD=$(pwd) PRGNAM=pysam VERSION=${VERSION:-0.18.0} -BUILD=${BUILD:-1} +BUILD=${BUILD:-2} TAG=${TAG:-_SBo} PKGTYPE=${PKGTYPE:-tgz} @@ -80,11 +80,6 @@ find -L . \ \( -perm 666 -o -perm 664 -o -perm 640 -o -perm 600 -o -perm 444 \ -o -perm 440 -o -perm 400 \) -exec chmod 644 {} \; -### pysam linked to htslib-1.14; SBo-htslib is at 1.14: -### for use system htslib: -export HTSLIB_LIBRARY_DIR=/usr/lib$LIBDIRSUFFIX -export HTSLIB_INCLUDE_DIR=/usr/include - #the source does not allow 'read' to 'other', which could cause a problem on reloading a Jupyter-notebook chmod 644 pysam.egg-info/* -- cgit v1.2.3