diff options
Diffstat (limited to 'academic/tophat')
| -rw-r--r-- | academic/tophat/README | 2 | ||||
| -rw-r--r-- | academic/tophat/slack-desc | 2 | ||||
| -rw-r--r-- | academic/tophat/tophat.SlackBuild | 4 | ||||
| -rw-r--r-- | academic/tophat/tophat.info | 8 |
4 files changed, 9 insertions, 7 deletions
diff --git a/academic/tophat/README b/academic/tophat/README index 79c93851ff938..f848a307023c3 100644 --- a/academic/tophat/README +++ b/academic/tophat/README @@ -8,3 +8,5 @@ Medicine at Johns Hopkins University, the Departments of Mathematics and Molecular and Cell Biology at the University of California, Berkeley and the Department of Stem Cell and Regenerative Biology at Harvard University. + +A recommended dependency is bowtie2. diff --git a/academic/tophat/slack-desc b/academic/tophat/slack-desc index 51a89d77037af..24853f0af5e90 100644 --- a/academic/tophat/slack-desc +++ b/academic/tophat/slack-desc @@ -14,6 +14,6 @@ tophat: high-throughput short read aligner Bowtie, and then analyzes the tophat: mapping results to identify splice junctions between exons. tophat: tophat: Home: http://tophat.cbcb.umd.edu/ -tophat: References: /usr/doc/tophat-2.0.11/References +tophat: References: /usr/doc/tophat-2.0.13/References tophat: tophat: diff --git a/academic/tophat/tophat.SlackBuild b/academic/tophat/tophat.SlackBuild index 9985b3e56068a..f6785c79fed0a 100644 --- a/academic/tophat/tophat.SlackBuild +++ b/academic/tophat/tophat.SlackBuild @@ -2,7 +2,7 @@ # Slackware build script for tophat -# Copyright 2013-2014 Petar Petrov, petar.petrov@student.oulu.fi +# Copyright 2013-2015 Petar Petrov, petar.petrov@student.oulu.fi # All rights reserved. # # Redistribution and use of this script, with or without modification, is @@ -23,7 +23,7 @@ # ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. PRGNAM=tophat -VERSION=${VERSION:-2.0.12} +VERSION=${VERSION:-2.0.13} BUILD=${BUILD:-1} TAG=${TAG:-_SBo} diff --git a/academic/tophat/tophat.info b/academic/tophat/tophat.info index 09c13df77dc59..37dc3fe290995 100644 --- a/academic/tophat/tophat.info +++ b/academic/tophat/tophat.info @@ -1,10 +1,10 @@ PRGNAM="tophat" -VERSION="2.0.12" +VERSION="2.0.13" HOMEPAGE="http://ccb.jhu.edu/software/tophat/" -DOWNLOAD="http://ccb.jhu.edu/software/tophat/downloads/tophat-2.0.12.tar.gz" -MD5SUM="b419604b45d94f6e878a141f05dd1d75" +DOWNLOAD="http://ccb.jhu.edu/software/tophat/downloads/tophat-2.0.13.tar.gz" +MD5SUM="df5c22c85d7c631ee37f61e91f81ae4d" DOWNLOAD_x86_64="" MD5SUM_x86_64="" -REQUIRES="bowtie2 samtools" +REQUIRES="" MAINTAINER="Petar Petrov" EMAIL="petar.petrov@student.oulu.fi" |