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| -rw-r--r-- | development/mmtf-cpp/README | 9 | ||||
| -rw-r--r-- | development/mmtf-cpp/mmtf-cpp.SlackBuild | 104 | ||||
| -rw-r--r-- | development/mmtf-cpp/mmtf-cpp.info | 10 | ||||
| -rw-r--r-- | development/mmtf-cpp/slack-desc | 19 |
4 files changed, 142 insertions, 0 deletions
diff --git a/development/mmtf-cpp/README b/development/mmtf-cpp/README new file mode 100644 index 000000000000..2ae471695eba --- /dev/null +++ b/development/mmtf-cpp/README @@ -0,0 +1,9 @@ +The MacroMolecular Transmission Format (MMTF) is a binary encoding of +biological structures. It includes the coordinates, the topology and +associated data. Specifically, a large subset of the data in mmCIF or +PDB files can be represented. Pronounced goals are a reduced file size +for efficient transmission over the Internet or from hard disk to +memory and fast decoding/parsing speed. + +This slackbuild does not compile but install the C++ headers needed to +compile sources that supports it, e.g. Avogadro 2. diff --git a/development/mmtf-cpp/mmtf-cpp.SlackBuild b/development/mmtf-cpp/mmtf-cpp.SlackBuild new file mode 100644 index 000000000000..c97a7f7de86c --- /dev/null +++ b/development/mmtf-cpp/mmtf-cpp.SlackBuild @@ -0,0 +1,104 @@ +#!/bin/bash + +# Slackware build script for mmtf-cpp + +# Copyright 2020-2022 Giancarlo Dessì, Cagliari, IT +# All rights reserved. +# +# Redistribution and use of this script, with or without modification, is +# permitted provided that the following conditions are met: +# +# 1. Redistributions of this script must retain the above copyright +# notice, this list of conditions and the following disclaimer. +# +# THIS SOFTWARE IS PROVIDED BY THE AUTHOR "AS IS" AND ANY EXPRESS OR IMPLIED +# WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF +# MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO +# EVENT SHALL THE AUTHOR BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, +# SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, +# PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; +# OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, +# WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR +# OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF +# ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. + +cd $(dirname $0) ; CWD=$(pwd) + +PRGNAM=mmtf-cpp +VERSION=${VERSION:-1.0.0} +BUILD=${BUILD:-1} +TAG=${TAG:-_SBo} +PKGTYPE=${PKGTYPE:-tgz} + +if [ -z "$ARCH" ]; then + case "$( uname -m )" in + i?86) ARCH=i586 ;; + arm*) ARCH=arm ;; + *) ARCH=$( uname -m ) ;; + esac +fi + +# If the variable PRINT_PACKAGE_NAME is set, then this script will report what +# the name of the created package would be, and then exit. This information +# could be useful to other scripts. +if [ ! -z "${PRINT_PACKAGE_NAME}" ]; then + echo "$PRGNAM-$VERSION-$ARCH-$BUILD$TAG.$PKGTYPE" + exit 0 +fi + +TMP=${TMP:-/tmp/SBo} +PKG=$TMP/package-$PRGNAM +OUTPUT=${OUTPUT:-/tmp} + +if [ "$ARCH" = "i586" ]; then + SLKCFLAGS="-O2 -march=i586 -mtune=i686" + LIBDIRSUFFIX="" +elif [ "$ARCH" = "i686" ]; then + SLKCFLAGS="-O2 -march=i686 -mtune=i686" + LIBDIRSUFFIX="" +elif [ "$ARCH" = "x86_64" ]; then + SLKCFLAGS="-O2 -fPIC" + LIBDIRSUFFIX="64" +else + SLKCFLAGS="-O2" + LIBDIRSUFFIX="" +fi + +set -e # Exit on most errors + +rm -rf $PKG +mkdir -p $TMP $PKG $OUTPUT +cd $TMP +rm -rf $PRGNAM-$VERSION +tar xvf $CWD/$PRGNAM-$VERSION.tar.gz +cd $PRGNAM-$VERSION +chown -R root:root . +find -L . \ + \( -perm 777 -o -perm 775 -o -perm 750 -o -perm 711 -o -perm 555 \ + -o -perm 511 \) -exec chmod 755 {} \; -o \ + \( -perm 666 -o -perm 664 -o -perm 640 -o -perm 600 -o -perm 444 \ + -o -perm 440 -o -perm 400 \) -exec chmod 644 {} \; + +mkdir -p build +cd build + cmake \ + -DCMAKE_INSTALL_PREFIX=/usr \ + -DCMAKE_BUILD_TYPE=Release .. + make + make install/strip DESTDIR=$PKG +cd .. + +rm -f $PKG/{,usr/}lib${LIBDIRSUFFIX}/*.la + +find $PKG -print0 | xargs -0 file | grep -e "executable" -e "shared object" | grep ELF \ + | cut -f 1 -d : | xargs strip --strip-unneeded 2> /dev/null || true + +mkdir -p $PKG/usr/doc/$PRGNAM-$VERSION +cp -a LICENSE CHANGELOG.md README.md $PKG/usr/doc/$PRGNAM-$VERSION +cat $CWD/$PRGNAM.SlackBuild > $PKG/usr/doc/$PRGNAM-$VERSION/$PRGNAM.SlackBuild + +mkdir -p $PKG/install +cat $CWD/slack-desc > $PKG/install/slack-desc + +cd $PKG +/sbin/makepkg -l y -c n $OUTPUT/$PRGNAM-$VERSION-$ARCH-$BUILD$TAG.$PKGTYPE diff --git a/development/mmtf-cpp/mmtf-cpp.info b/development/mmtf-cpp/mmtf-cpp.info new file mode 100644 index 000000000000..0ee5c598231a --- /dev/null +++ b/development/mmtf-cpp/mmtf-cpp.info @@ -0,0 +1,10 @@ +PRGNAM="mmtf-cpp" +VERSION="1.0.0" +HOMEPAGE="https://github.com/rcsb/mmtf-cpp" +DOWNLOAD="https://github.com/rcsb/mmtf-cpp/archive/v1.0.0/mmtf-cpp-1.0.0.tar.gz" +MD5SUM="553f028a771b9d9f824903a2bf34be51" +DOWNLOAD_x86_64="" +MD5SUM_x86_64="" +REQUIRES="msgpack-c" +MAINTAINER="Giancarlo Dessì" +EMAIL="slack@giand.it" diff --git a/development/mmtf-cpp/slack-desc b/development/mmtf-cpp/slack-desc new file mode 100644 index 000000000000..e9436665280d --- /dev/null +++ b/development/mmtf-cpp/slack-desc @@ -0,0 +1,19 @@ +# HOW TO EDIT THIS FILE: +# The "handy ruler" below makes it easier to edit a package description. +# Line up the first '|' above the ':' following the base package name, and +# the '|' on the right side marks the last column you can put a character in. +# You must make exactly 11 lines for the formatting to be correct. It's also +# customary to leave one space after the ':' except on otherwise blank lines. + + |-----handy-ruler------------------------------------------------------| +mmtf-cpp: mmtf-cpp (pure C++ implementation of the MMTF API) +mmtf-cpp: +mmtf-cpp: The MacroMolecular Transmission Format (MMTF) is a binary encoding +mmtf-cpp: of biological structures +mmtf-cpp: +mmtf-cpp: +mmtf-cpp: +mmtf-cpp: +mmtf-cpp: homepage: https://github.com/rcsb/mmtf-cpp +mmtf-cpp: +mmtf-cpp: |