diff options
| author | brobr <sborg63@disroot.org> | 2023-09-17 21:55:05 +0100 |
|---|---|---|
| committer | Willy Sudiarto Raharjo <willysr@slackbuilds.org> | 2023-09-23 08:31:12 +0700 |
| commit | 8a052f20110a877dc440589795eef3b0004ed564 (patch) | |
| tree | 4844143e1c0c23eb496bdbd0a0c76d0090711cd6 /academic | |
| parent | 6bb11f8730c30614c69ea0178a062ffaecc5221f (diff) | |
academic/pysam: set to use internal htslib
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
Diffstat (limited to 'academic')
| -rw-r--r-- | academic/pysam/pysam.SlackBuild | 7 | ||||
| -rw-r--r-- | academic/pysam/pysam.info | 2 |
2 files changed, 3 insertions, 6 deletions
diff --git a/academic/pysam/pysam.SlackBuild b/academic/pysam/pysam.SlackBuild index b4a536bcb25b5..17d0db3198a0f 100644 --- a/academic/pysam/pysam.SlackBuild +++ b/academic/pysam/pysam.SlackBuild @@ -26,7 +26,7 @@ cd $(dirname $0) ; CWD=$(pwd) PRGNAM=pysam VERSION=${VERSION:-0.21.0} -BUILD=${BUILD:-1} +BUILD=${BUILD:-2} TAG=${TAG:-_SBo} PKGTYPE=${PKGTYPE:-tgz} @@ -80,10 +80,7 @@ find -L . \ \( -perm 666 -o -perm 664 -o -perm 640 -o -perm 600 -o -perm 444 \ -o -perm 440 -o -perm 400 \) -exec chmod 644 {} \; -# pysam now at htslib-1.17; SBo-htslib is at 1.17: -# can use system htslib: -export HTSLIB_LIBRARY_DIR=/usr/lib$LIBDIRSUFFIX -export HTSLIB_INCLUDE_DIR=/usr/include +# pysam linked to htslib-1.17; SBo-htslib is at 1.18 #the source does not allow 'read' to 'other', which could cause a problem on reloading a Jupyter-notebook chmod 644 pysam.egg-info/* diff --git a/academic/pysam/pysam.info b/academic/pysam/pysam.info index 37d066c020030..d71c4d96bde86 100644 --- a/academic/pysam/pysam.info +++ b/academic/pysam/pysam.info @@ -5,6 +5,6 @@ DOWNLOAD="https://pypi.python.org/packages/source/p/pysam/pysam-0.21.0.tar.gz" MD5SUM="dca7fb36d2cf69ef887fe05ddd726998" DOWNLOAD_x86_64="" MD5SUM_x86_64="" -REQUIRES="htslib" +REQUIRES="" MAINTAINER="Rob van Nues" EMAIL="sborg63@disroot.org" |