academic/aeskulap: Added (medical image viewer)

Signed-off-by: Dave Woodfall <dave@slackbuilds.org>

Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>

6 files changed, 443 insertions, 0 deletions

diff --git a/academic/aeskulap/README b/academic/aeskulap/README
new file mode 100644
index 000000000000..5e074de1a015
--- /dev/null
+++ b/academic/aeskulap/README
@@ -0,0 +1,8 @@
+aeskulap (medical image viewer)
+
+aeskulap is able to load a series of special images stored in the DICOM
+format for review. Additionally Aeskulap is able to query and fetch
+DICOM images from archive nodes (also called PACS) over the network.
+The goal of this project is to create a full open source replacement
+for commercially available DICOM viewers.
+
diff --git a/academic/aeskulap/aeskulap.SlackBuild b/academic/aeskulap/aeskulap.SlackBuild
new file mode 100644
index 000000000000..b5d13b1f9fc9
--- /dev/null
+++ b/academic/aeskulap/aeskulap.SlackBuild
@@ -0,0 +1,122 @@
+#!/bin/sh
+
+# Slackware build script for aeskulap
+
+# Copyright 2011 Federico Lupi, flupi@mclink.it, http://www.mclink.it/personal/MG2508
+# Modified by Matt Dinslage (daedra1980@gmail.com)
+# All rights reserved.
+#
+# Redistribution and use of this script, with or without modification, is
+# permitted provided that the following conditions are met:
+#
+# 1. Redistributions of this script must retain the above copyright
+#    notice, this list of conditions and the following disclaimer.
+#
+# THIS SOFTWARE IS PROVIDED BY THE AUTHOR ''AS IS'' AND ANY EXPRESS OR IMPLIED
+# WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF
+# MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO
+# EVENT SHALL THE AUTHOR BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,
+# SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
+# PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS;
+# OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
+# WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR
+# OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF
+# ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
+
+cd $(dirname $0) ; CWD=$(pwd)
+
+PRGNAM=aeskulap
+VERSION=${VERSION:-0.2.2_e710562d}
+BUILD=${BUILD:-1}
+TAG=${TAG:-_SBo}
+PKGTYPE=${PKGTYPE:-tgz}
+
+if [ -z "$ARCH" ]; then
+  case "$( uname -m )" in
+    i?86) ARCH=i586 ;;
+    arm*) ARCH=arm ;;
+       *) ARCH=$( uname -m ) ;;
+  esac
+fi
+
+# If the variable PRINT_PACKAGE_NAME is set, then this script will report what
+# the name of the created package would be, and then exit. This information
+# could be useful to other scripts.
+if [ ! -z "${PRINT_PACKAGE_NAME}" ]; then
+  echo "$PRGNAM-$VERSION-$ARCH-$BUILD$TAG.$PKGTYPE"
+  exit 0
+fi
+
+TMP=${TMP:-/tmp/SBo}
+PKG=$TMP/package-$PRGNAM
+OUTPUT=${OUTPUT:-/tmp}
+
+if [ "$ARCH" = "i586" ]; then
+  SLKCFLAGS="-O2 -march=i586 -mtune=i686"
+  LIBDIRSUFFIX=""
+elif [ "$ARCH" = "i686" ]; then
+  SLKCFLAGS="-O2 -march=i686 -mtune=i686"
+  LIBDIRSUFFIX=""
+elif [ "$ARCH" = "x86_64" ]; then
+  SLKCFLAGS="-O2 -fPIC"
+  LIBDIRSUFFIX="64"
+else
+  SLKCFLAGS="-O2"
+  LIBDIRSUFFIX=""
+fi
+
+set -e
+
+rm -rf $PKG
+mkdir -p $TMP $PKG $OUTPUT
+cd $TMP
+rm -rf $PRGNAM-$VERSION
+tar xvf $CWD/$PRGNAM-$VERSION.tar.gz
+cd $PRGNAM-$VERSION
+chown -R root:root .
+find -L . \
+ \( -perm 777 -o -perm 775 -o -perm 750 -o -perm 711 -o -perm 555 -o -perm 511 \) \
+ -exec chmod 755 {} \; -o \
+ \( -perm 666 -o -perm 664 -o -perm 600 -o -perm 444 -o -perm 440 -o -perm 400 \) \
+ -exec chmod 644 {} \;
+
+patch -p1 < $CWD/newDicomElement.patch
+
+# point to the correct lib version depending on the arch
+sed -i 's/lib -ldcmjpeg/%{_lib} -ldcmjpeg/' configure.ac
+libtoolize --force --copy --install
+autoreconf --force --install
+intltoolize --force --copy --automake
+
+CFLAGS="$SLKCFLAGS" \
+CXXFLAGS="$SLKCFLAGS" \
+./configure \
+  --prefix=/usr \
+  --libdir=/usr/lib${LIBDIRSUFFIX} \
+  --sysconfdir=/etc \
+  --localstatedir=/var \
+  --mandir=/usr/man \
+  --disable-static \
+  --with-gsettings \
+  --build=$ARCH-slackware-linux
+
+make
+make install DESTDIR=$PKG
+
+rm -f $PKG/{,usr/}lib${LIBDIRSUFFIX}/*.la
+
+find $PKG | xargs file | grep -e "executable" -e "shared object" | grep ELF \
+  | cut -f 1 -d : | xargs strip --strip-unneeded 2> /dev/null || true
+
+mkdir -p $PKG/usr/doc/$PRGNAM-$VERSION
+cp -a \
+  ABOUT-NLS COPYING NEWS COPYING.DOC COPYING.LIB ChangeLog INSTALL README \
+  $PKG/usr/doc/$PRGNAM-$VERSION
+cat $CWD/$PRGNAM.SlackBuild > $PKG/usr/doc/$PRGNAM-$VERSION/$PRGNAM.SlackBuild
+
+mkdir -p $PKG/install
+cat $CWD/slack-desc > $PKG/install/slack-desc
+cat $CWD/doinst.sh > $PKG/install/doinst.sh
+
+cd $PKG
+/sbin/makepkg -l y -c n $OUTPUT/$PRGNAM-$VERSION-$ARCH-$BUILD$TAG.$PKGTYPE
diff --git a/academic/aeskulap/aeskulap.info b/academic/aeskulap/aeskulap.info
new file mode 100644
index 000000000000..4078803b0899
--- /dev/null
+++ b/academic/aeskulap/aeskulap.info
@@ -0,0 +1,10 @@
+PRGNAM="aeskulap"
+VERSION="0.2.2_e710562d"
+HOMEPAGE="https://gitlab.com/stefanhusmann/aeskulap"
+DOWNLOAD="https://www.dropbox.com/s/84xpkwtgj0r2bd8/aeskulap-0.2.2_e710562d.tar.gz"
+MD5SUM="6be6239b2bec4744db7e3b203e29d77f"
+DOWNLOAD_x86_64=""
+MD5SUM_x86_64=""
+REQUIRES="dcmtk"
+MAINTAINER="M.Dinslage"
+EMAIL="daedra1980@gmail.com"
diff --git a/academic/aeskulap/doinst.sh b/academic/aeskulap/doinst.sh
new file mode 100644
index 000000000000..09b892d0024b
--- /dev/null
+++ b/academic/aeskulap/doinst.sh
@@ -0,0 +1,15 @@
+if [ -e usr/share/icons/hicolor/icon-theme.cache ]; then
+  if [ -x /usr/bin/gtk-update-icon-cache ]; then
+    /usr/bin/gtk-update-icon-cache -f usr/share/icons/hicolor >/dev/null 2>&1
+  fi
+fi
+
+if [ -x /usr/bin/update-desktop-database ]; then
+  /usr/bin/update-desktop-database -q usr/share/applications >/dev/null 2>&1
+fi
+
+if [ -e usr/share/glib-2.0/schemas ]; then
+  if [ -x /usr/bin/glib-compile-schemas ]; then
+    /usr/bin/glib-compile-schemas usr/share/glib-2.0/schemas >/dev/null 2>&1
+  fi
+fi
diff --git a/academic/aeskulap/newDicomElement.patch b/academic/aeskulap/newDicomElement.patch
new file mode 100644
index 000000000000..4ffc76015bad
--- /dev/null
+++ b/academic/aeskulap/newDicomElement.patch
@@ -0,0 +1,269 @@
+Author: Gert Wollny <gewo@debian.org>
+Description: correct code for newDicomElement now being a member of DcmItem
+Bug: https://bugs.debian.org/865591
+
+--- a/imagepool/netloader.cpp
++++ b/imagepool/netloader.cpp
+@@ -102,29 +102,29 @@ bool NetLoader::run() {
+ 		DcmDataset query;
+ 		DcmElement* e = NULL;
+ 		
+-		e = newDicomElement(DCM_QueryRetrieveLevel);
++		e = DcmItem::newDicomElement(DCM_QueryRetrieveLevel);
+ 		e->putString("STUDY");
+ 		query.insert(e);
+ 
+-		e = newDicomElement(DCM_PatientName);
++		e = DcmItem::newDicomElement(DCM_PatientName);
+ 		query.insert(e);
+ 
+-		e = newDicomElement(DCM_PatientID);
++		e = DcmItem::newDicomElement(DCM_PatientID);
+ 		query.insert(e);
+ 
+-		e = newDicomElement(DCM_StudyDate);
++		e = DcmItem::newDicomElement(DCM_StudyDate);
+ 		query.insert(e);
+ 
+-		e = newDicomElement(DCM_StudyTime);
++		e = DcmItem::newDicomElement(DCM_StudyTime);
+ 		query.insert(e);
+ 
+-		e = newDicomElement(DCM_AccessionNumber);
++		e = DcmItem::newDicomElement(DCM_AccessionNumber);
+ 		query.insert(e);
+ 
+-		e = newDicomElement(DCM_StudyID);
++		e = DcmItem::newDicomElement(DCM_StudyID);
+ 		query.insert(e);
+ 	
+-		e = newDicomElement(DCM_StudyInstanceUID);
++		e = DcmItem::newDicomElement(DCM_StudyInstanceUID);
+ 		e->putString(studyinstanceuid.c_str());
+ 		query.insert(e);
+ 	
+@@ -150,22 +150,22 @@ bool NetLoader::run() {
+ 			DcmDataset query;
+ 			DcmElement* e = NULL;
+ 			
+-			e = newDicomElement(DCM_QueryRetrieveLevel);
++			e = DcmItem::newDicomElement(DCM_QueryRetrieveLevel);
+ 			e->putString("SERIES");
+ 			query.insert(e);
+ 		
+-			e = newDicomElement(DCM_StudyInstanceUID);
++			e = DcmItem::newDicomElement(DCM_StudyInstanceUID);
+ 			e->putString(studyinstanceuid.c_str());
+ 			query.insert(e);
+ 		
+-			e = newDicomElement(DCM_SeriesInstanceUID);
++			e = DcmItem::newDicomElement(DCM_SeriesInstanceUID);
+ 			e->putString(i->c_str());
+ 			query.insert(e);
+ 
+-			e = newDicomElement(DCM_Modality);
++			e = DcmItem::newDicomElement(DCM_Modality);
+ 			query.insert(e);
+ 
+-			e = newDicomElement(DCM_SeriesNumber);
++			e = DcmItem::newDicomElement(DCM_SeriesNumber);
+ 			query.insert(e);
+ 
+ 			std::cout << "C-Move request:" << std::endl;
+--- a/imagepool/netquery.cpp
++++ b/imagepool/netquery.cpp
+@@ -196,64 +196,64 @@ void query_from_net(
+ 	DcmDataset query;
+ 	DcmElement* e = NULL;
+ 	
+-	e = newDicomElement(DCM_QueryRetrieveLevel);
++	e = DcmItem::newDicomElement(DCM_QueryRetrieveLevel);
+ 	e->putString("STUDY");
+ 	query.insert(e);
+ 
+-	e = newDicomElement(DCM_SpecificCharacterSet);
++	e = DcmItem::newDicomElement(DCM_SpecificCharacterSet);
+ 	e->putString(dicom_enc.c_str());
+ 	query.insert(e);
+ 
+-	e = newDicomElement(DCM_PatientName);
++	e = DcmItem::newDicomElement(DCM_PatientName);
+ 	e->putString(patientsname.c_str());
+ 	query.insert(e);
+ 
+-	e = newDicomElement(DCM_PatientID);
++	e = DcmItem::newDicomElement(DCM_PatientID);
+ 	e->putString(convert_string_to(patientid.c_str(), system_enc).c_str());
+ 	query.insert(e);
+ 
+-	e = newDicomElement(DCM_SOPClassesInStudy);
++	e = DcmItem::newDicomElement(DCM_SOPClassesInStudy);
+ 	query.insert(e);
+ 
+-	e = newDicomElement(DCM_ModalitiesInStudy);
++	e = DcmItem::newDicomElement(DCM_ModalitiesInStudy);
+ 	e->putString(modality.c_str());
+ 	query.insert(e);
+ 
+-	e = newDicomElement(DCM_PatientBirthDate);
++	e = DcmItem::newDicomElement(DCM_PatientBirthDate);
+ 	query.insert(e);
+ 
+-	e = newDicomElement(DCM_PatientSex);
++	e = DcmItem::newDicomElement(DCM_PatientSex);
+ 	query.insert(e);
+ 
+-	e = newDicomElement(DCM_StudyDate);
++	e = DcmItem::newDicomElement(DCM_StudyDate);
+ 	e->putString(date.c_str());
+ 	query.insert(e);
+ 
+-	e = newDicomElement(DCM_StudyTime);
++	e = DcmItem::newDicomElement(DCM_StudyTime);
+ 	query.insert(e);
+ 
+-	e = newDicomElement(DCM_NumberOfStudyRelatedSeries);
++	e = DcmItem::newDicomElement(DCM_NumberOfStudyRelatedSeries);
+ 	query.insert(e);
+ 
+-	e = newDicomElement(DCM_NumberOfStudyRelatedInstances);
++	e = DcmItem::newDicomElement(DCM_NumberOfStudyRelatedInstances);
+ 	query.insert(e);
+ 
+-	e = newDicomElement(DCM_AccessionNumber);
++	e = DcmItem::newDicomElement(DCM_AccessionNumber);
+ 	e->putString(accessionnumber.c_str());
+ 	query.insert(e);
+ 
+-	e = newDicomElement(DCM_StudyID);
++	e = DcmItem::newDicomElement(DCM_StudyID);
+ 	query.insert(e);
+ 
+-	e = newDicomElement(DCM_StudyInstanceUID);
++	e = DcmItem::newDicomElement(DCM_StudyInstanceUID);
+ 	query.insert(e);
+ 
+-	e = newDicomElement(DCM_StudyDescription);
++	e = DcmItem::newDicomElement(DCM_StudyDescription);
+ 	e->putString(description.c_str());
+ 	query.insert(e);
+ 
+ 	// StationName not allowed in StudyRoot
+-	/*e = newDicomElement(DCM_StationName);
++	/*e = DcmItem::newDicomElement(DCM_StationName);
+ 	e->putString(station.c_str());
+ 	query.insert(e);*/
+ 
+@@ -284,36 +284,36 @@ void query_series_from_net(const std::st
+ 	DcmDataset query;
+ 	DcmElement* e = NULL;
+ 	
+-	e = newDicomElement(DCM_QueryRetrieveLevel);
++	e = DcmItem::newDicomElement(DCM_QueryRetrieveLevel);
+ 	e->putString("SERIES");
+ 	query.insert(e);
+ 
+-	e = newDicomElement(DCM_SpecificCharacterSet);
++	e = DcmItem::newDicomElement(DCM_SpecificCharacterSet);
+ 	query.insert(e);
+ 
+-	e = newDicomElement(DCM_StudyInstanceUID);
++	e = DcmItem::newDicomElement(DCM_StudyInstanceUID);
+ 	e->putString(studyinstanceuid.c_str());
+ 	query.insert(e);
+ 
+-	e = newDicomElement(DCM_SeriesInstanceUID);
++	e = DcmItem::newDicomElement(DCM_SeriesInstanceUID);
+ 	query.insert(e);
+ 
+-	e = newDicomElement(DCM_SeriesNumber);
++	e = DcmItem::newDicomElement(DCM_SeriesNumber);
+ 	query.insert(e);
+ 
+-	e = newDicomElement(DCM_Modality);
++	e = DcmItem::newDicomElement(DCM_Modality);
+ 	query.insert(e);
+ 
+-	e = newDicomElement(DCM_SeriesDescription);
++	e = DcmItem::newDicomElement(DCM_SeriesDescription);
+ 	query.insert(e);
+ 
+-	e = newDicomElement(DCM_SeriesTime);
++	e = DcmItem::newDicomElement(DCM_SeriesTime);
+ 	query.insert(e);
+ 
+-	e = newDicomElement(DCM_StationName);
++	e = DcmItem::newDicomElement(DCM_StationName);
+ 	query.insert(e);
+ 
+-	e = newDicomElement(DCM_NumberOfSeriesRelatedInstances);
++	e = DcmItem::newDicomElement(DCM_NumberOfSeriesRelatedInstances);
+ 	query.insert(e);
+ 
+ 
+@@ -357,22 +357,22 @@ int query_series_instances(const std::st
+ 	DcmDataset query;
+ 	DcmElement* e = NULL;
+ 	
+-	e = newDicomElement(DCM_QueryRetrieveLevel);
++	e = DcmItem::newDicomElement(DCM_QueryRetrieveLevel);
+ 	e->putString("IMAGE");
+ 	query.insert(e);
+ 
+-	e = newDicomElement(DCM_StudyInstanceUID);
++	e = DcmItem::newDicomElement(DCM_StudyInstanceUID);
+ 	e->putString(studyinstanceuid.c_str());
+ 	query.insert(e);
+ 
+-	e = newDicomElement(DCM_SeriesInstanceUID);
++	e = DcmItem::newDicomElement(DCM_SeriesInstanceUID);
+ 	e->putString(seriesinstanceuid.c_str());
+ 	query.insert(e);
+ 
+-	e = newDicomElement(DCM_SOPInstanceUID);
++	e = DcmItem::newDicomElement(DCM_SOPInstanceUID);
+ 	query.insert(e);
+ 
+-	e = newDicomElement(DCM_InstanceNumber);
++	e = DcmItem::newDicomElement(DCM_InstanceNumber);
+ 	query.insert(e);
+ 
+ 	std::cout << "NEW QUERY:" << std::endl;
+@@ -394,21 +394,21 @@ int query_study_series(const std::string
+ 	DcmDataset query;
+ 	DcmElement* e = NULL;
+ 	
+-	e = newDicomElement(DCM_QueryRetrieveLevel);
++	e = DcmItem::newDicomElement(DCM_QueryRetrieveLevel);
+ 	e->putString("SERIES");
+ 	query.insert(e);
+ 
+-	e = newDicomElement(DCM_StudyInstanceUID);
++	e = DcmItem::newDicomElement(DCM_StudyInstanceUID);
+ 	e->putString(studyinstanceuid.c_str());
+ 	query.insert(e);
+ 
+-	e = newDicomElement(DCM_SeriesInstanceUID);
++	e = DcmItem::newDicomElement(DCM_SeriesInstanceUID);
+ 	query.insert(e);
+ 
+-	e = newDicomElement(DCM_SeriesNumber);
++	e = DcmItem::newDicomElement(DCM_SeriesNumber);
+ 	query.insert(e);
+ 
+-	e = newDicomElement(DCM_Modality);
++	e = DcmItem::newDicomElement(DCM_Modality);
+ 	query.insert(e);
+ 
+ 	std::cout << "NEW QUERY:" << std::endl;
+--- a/imagepool/poolassociation.h
++++ b/imagepool/poolassociation.h
+@@ -101,7 +101,7 @@ public:
+ 			return false;
+ 			}
+ 
+-		DcmElement *elem = newDicomElement(tag);
++		DcmElement *elem = DcmItem::newDicomElement(tag);
+ 		if (elem == NULL) {
+ 			printf("cannot create element for tag: (%04x,%04x)", g, e);
+ 			return false;
diff --git a/academic/aeskulap/slack-desc b/academic/aeskulap/slack-desc
new file mode 100644
index 000000000000..5a3a8776e8d1
--- /dev/null
+++ b/academic/aeskulap/slack-desc
@@ -0,0 +1,19 @@
+# HOW TO EDIT THIS FILE:
+# The "handy ruler" below makes it easier to edit a package description.
+# Line up the first '|' above the ':' following the base package name, and
+# the '|' on the right side marks the last column you can put a character in.
+# You must make exactly 11 lines for the formatting to be correct.  It's also
+# customary to leave one space after the ':' except on otherwise blank lines.
+
+        |-----handy-ruler------------------------------------------------------|
+aeskulap: aeskulap (medical image viewer)
+aeskulap:
+aeskulap: It is able to load a series of special images stored in the DICOM
+aeskulap: format for review. Additionally Aeskulap is able to query and fetch
+aeskulap: DICOM images from archive nodes (also called PACS) over the network.
+aeskulap: The goal of this project is to create a full open source replacement
+aeskulap: for commercially available DICOM viewers.
+aeskulap:
+aeskulap: http://aeskulap.nongnu.org/
+aeskulap:
+aeskulap: